| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,114,312 – 10,114,414 |
| Length | 102 |
| Max. P | 0.908104 |
| Location | 10,114,312 – 10,114,414 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.79 |
| Mean single sequence MFE | -38.80 |
| Consensus MFE | -30.35 |
| Energy contribution | -29.30 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10114312 102 + 22407834 ---AAAUGCCAUGGGCGACCAGGCCGGUUUGGCGGAAGCGAUAACAAAGCCGCUGACACUUGACAAACUUGCGCGAGUGUCAAAAAAAAAUCUCCGUGAAAUGG------------G- ---....(((.(((....))))))(.((((.(((((((((..........))))((((((((.(........)))))))))...........))))).)))).)------------.- ( -36.40) >DroPse_CAF1 37238 103 + 1 UCGACAAGCCGUGGGCGACCAGGUUGGU-UGGCGGAAGUGAUAACAAAGCCGCUGACACUUGACAAACUUGCGCGAGUGUCAAA---AAAUCUUUGCGCAAUGAGAG----------- .((((.((((.(((....))))))).))-))((((...((....))...))))(((((((((.(........))))))))))..---...((((........)))).----------- ( -34.30) >DroEre_CAF1 39213 112 + 1 ---AAAUGCCAUGGGCGACCAGGCCGGUUUGGCGGAAGCGAUAACAAAGCCGCUGACACUUGACAAACUUGCGCGAGUGUCAAA---AAAUCUCCGCGAAAUGGUAGGCAGCUGAGGG ---...((((.(((....))).((((.(((.(((((((((..........))))((((((((.(........)))))))))...---.....))))).))))))).))))........ ( -40.80) >DroYak_CAF1 41696 112 + 1 ---AAAUGCCAUGGGCGACCAGGCCGGUUUGGCGGAAGCGAUAACAAAGCCGCUGACACUUGACAAACUUGCGCGAGUGUCAAA---AAAUCUCCGCGAAAUGGGCGGCAUUUGGUGG ---(((((((.(((....))).(((.((((.(((((((((..........))))((((((((.(........)))))))))...---.....))))).)))).))))))))))..... ( -48.80) >DroAna_CAF1 44121 103 + 1 ---ACAAGCCCUGGGCGACCAGGUUGGU-UGGCGGAAGCGAUAACAAAGCCGCUGACACUUGACAAACUUGCGCGAGUGUCAAA---AAAUCUCCGCGGCCUG-----CA--GGAUG- ---....(((((((....)))))..(((-((.((((((((..........))))((((((((.(........)))))))))...---.....))))))))).)-----).--.....- ( -38.20) >DroPer_CAF1 37277 103 + 1 UCGACAAGCCGUGGGCGACCAGGUUGGU-UGGCGGAAGUGAUAACAAAGCCGCUGACACUUGACAAACUUGCGCGAGUGUCAAA---AAAUCUUUGCGCAAUGAGAG----------- .((((.((((.(((....))))))).))-))((((...((....))...))))(((((((((.(........))))))))))..---...((((........)))).----------- ( -34.30) >consensus ___AAAAGCCAUGGGCGACCAGGCCGGU_UGGCGGAAGCGAUAACAAAGCCGCUGACACUUGACAAACUUGCGCGAGUGUCAAA___AAAUCUCCGCGAAAUGGGAG_________G_ .......(((.(((....)))))).......(((((((((..........))))((((((((.(........)))))))))...........)))))..................... (-30.35 = -29.30 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:26 2006