Locus 3471

Sequence ID 2L_DroMel_CAF1
Location 10,096,268 – 10,096,367
Length 99
Max. P 0.924472
window5485

overview

Window 5

Location 10,096,268 – 10,096,367
Length 99
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 73.56
Mean single sequence MFE -30.16
Consensus MFE -19.61
Energy contribution -19.53
Covariance contribution -0.08
Combinations/Pair 1.36
Mean z-score -1.58
Structure conservation index 0.65
SVM decision value 1.16
SVM RNA-class probability 0.924472
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10096268 99 + 22407834
CAAGUGGAUCCGAAAGUGGAUCUGAAUUGCGGGGUUGUGGAGCCUGUAGUCGGAAGUCUGAGGCAUUCCGGAAUG-----GAAUGGGCAUGCCAUUCGUAUAUG
.....(((((((....)))))))....(((...(((.((((((((.(((.(....).)))))))..)))).))).-----((((((.....))))))))).... ( -33.10)
>DroSec_CAF1 22761 97 + 1
CAAGUGGAUCCAAAA--GGAUCUGGAUUGCGGGGUUGUGGAGCCUGAAGUCGCAAGUCUGAGGCAUUCCGGAAUG-----GAAUGGGCAUGCCAUUCGUAUACG
.....((((((....--))))))(...(((...(((.((((((((..((.(....).)).))))..)))).))).-----((((((.....)))))))))..). ( -32.30)
>DroSim_CAF1 23423 97 + 1
CAAGUGGAUCCAAAA--GGAUCUGGAUUGCGGGGUUGUGGAGCCUGAAGUCGCAAGUCAGAGGCAUUCCGGAAUG-----GAAUGGGCAUGCCAUUCGUAUACG
.....((((((....--))))))(((.(((.(((((....)))))...(.(....).)....))).)))......-----((((((.....))))))....... ( -30.10)
>DroEre_CAF1 21381 97 + 1
CAAGUGGAUCCGAAA--GGAUCUGGAUAGCGGGGUCGUGGAGUCUGAGGUCUGAGGUCUGAGGGAUUUCGGAAUG-----GAAUGGGCAUGCCAUUCGUAUGUG
.....((((((....--))))))((((..((((.((...)).))))..))))((((((.....))))))......-----((((((.....))))))....... ( -32.50)
>DroYak_CAF1 22715 102 + 1
CAAGUGGAUCCGAAG--GGAUCUGGAUUGCGGGGUUGUGGACUCCGAAGUCGGAAGUUGAAGGGAUUCCGGAAUGGAGUGGAAUGGGUAUGCCAUUCGUAUAUG
.....((((((....--))))))..(((.(((((((.(.(((((((....))).))))...).))))))).)))......((((((.....))))))....... ( -35.30)
>DroAna_CAF1 25076 76 + 1
CACGCACAUGCACAU--GCC---------CAUGCCCAUGCCCUCCG-------AG-----GGUGAAUCCGAGGGG---U-GAAU-GCCAUGCCAUUCGUAUAUG
......((((.((..--(((---------(........((((....-------.)-----))).........)))---)-((((-(......))))))).)))) ( -17.63)
>consensus
CAAGUGGAUCCAAAA__GGAUCUGGAUUGCGGGGUUGUGGAGCCUGAAGUCGGAAGUCUGAGGCAUUCCGGAAUG_____GAAUGGGCAUGCCAUUCGUAUAUG
.....((((((......))))))..........(((.((((((((...(.(....).)..))))..)))).)))......((((((.....))))))....... (-19.61 = -19.53 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:14 2006