Locus 3470

Sequence ID 2L_DroMel_CAF1
Location 10,089,699 – 10,089,789
Length 90
Max. P 0.922630
window5484

overview

Window 4

Location 10,089,699 – 10,089,789
Length 90
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 74.05
Mean single sequence MFE -30.32
Consensus MFE -16.60
Energy contribution -18.10
Covariance contribution 1.50
Combinations/Pair 1.14
Mean z-score -2.13
Structure conservation index 0.55
SVM decision value 1.15
SVM RNA-class probability 0.922630
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10089699 90 - 22407834
U---------UGUGCGUGUGUCCGUGCUUAAAUAACUGGAUGAGGCCUACAGCCUUGUUGUCCAUAAAAACGCACCCAUAUGCACCUCUUCCGCUCCCG
.---------.(((((((((...((((.........((((((((((.....)))))...))))).......)))).))))))))).............. ( -26.59)
>DroSec_CAF1 16330 89 - 1
UGAGUGCCAGAGUGCGUGUGUCCGUGCUCAAAGGUCUGGCUG-GGCCUACAGCCUUGUUAU---------CGCACGCAUAUGCACCUCUUCCGCUCCCA
.(((((..((((((((((((..(((((...((.(...(((((-......))))).).))..---------.))))))))))))).))))..)))))... ( -36.90)
>DroSim_CAF1 16907 89 - 1
UGGAUGCCAGAGUGCGUGUGUCCGUGCUCAAAGGACUGGCUG-GGCCUACAGCCUUGUUAU---------CGCACGCAUAUGCACCUCUUCCGCUCCCA
.(((.((.((((((((((((..(((((......(((.(((((-......)))))..)))..---------.))))))))))))).))))...))))).. ( -36.60)
>DroYak_CAF1 16332 88 - 1
UGAAUGCCAAAGUGCGUAUGUCCGUGCUCGAAGGAC----------CUCCAGCCUCGUUGUCCAUAAAAA-GCGCCCAUAUGCACCUCAUCCGCUCGCA
...........(((((((((...(((((....((((----------..(.......)..))))......)-)))).))))))))).............. ( -21.20)
>consensus
UGAAUGCCAGAGUGCGUGUGUCCGUGCUCAAAGGACUGGCUG_GGCCUACAGCCUUGUUAU_________CGCACCCAUAUGCACCUCUUCCGCUCCCA
...........(((((((((..(((((((....))..(((((.......))))).................)))))))))))))).............. (-16.60 = -18.10 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:13 2006