Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,065,800 – 1,065,909 |
Length | 109 |
Max. P | 0.530176 |
Location | 1,065,800 – 1,065,909 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -35.48 |
Consensus MFE | -25.27 |
Energy contribution | -28.03 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.06 |
Mean z-score | -1.64 |
Structure conservation index | 0.71 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1065800 109 - 22407834 UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCUUGGAACUUCCCGGGUCCCAGUGGCAAGUGUACUGUAGAAGUCGA .((((..((....))...))))((((((((..((..(((..(.(((((.(((((((......)))(((......))))).)).))))))..)))...))..)))))))) ( -29.10) >DroSec_CAF1 48021 109 - 1 UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGUGGAAGACGA .((((..((....))...)))).......((((.(((((.(((.((((((((..(((.((..((((((......)))))).))))))))))))).))))))))..)))) ( -44.70) >DroSim_CAF1 39889 109 - 1 UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGCAGAAGACGA .((((..((....))...)))).......((((......((((.((((((((..(((.((..((((((......)))))).))))))))))))).))))......)))) ( -39.30) >DroEre_CAF1 45143 97 - 1 UUCGAAAGGAAUUCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGGACUUCC-------CAGUGCCAAGUGU-----AUAAGACGA ..((((((..(.((......)).)..))))))............((((((((..((......))(((((....))-------))).)))))))).-----......... ( -28.80) >consensus UUCGAAAGGAAUCCCGCCUCGAUUGACUUUCGUAUCCACCAGAUCGCUUGGCCAGCUCGUUUGCCUGGAACUUCCCAGGUUGCAGUGCCAAGUGUUCUGUAGAAGACGA .((((..((....))...)))).......((((......((((.((((((((..(((.(...((((((......))))))..)))))))))))).))))......)))) (-25.27 = -28.03 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:37 2006