Locus 3469

Sequence ID	2L_DroMel_CAF1
Location	10,088,248 – 10,088,339
Length	91
Max. P	0.915400

overview

Window 3

Location	10,088,248 – 10,088,339
Length	91
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	93.46
Mean single sequence MFE	-22.48
Consensus MFE	-20.28
Energy contribution	-20.20
Covariance contribution	-0.08
Combinations/Pair	1.11
Mean z-score	-1.44
Structure conservation index	0.90
SVM decision value	1.10
SVM RNA-class probability	0.915400
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10088248 91 + 22407834
AUCCG--AGUCCUUAAUGCAUGUAUUUAUCUGGAUCUGGGCAGGAUUAUCUGCACAAUAGCCCAUAAGCUGUGUGCCAAAUAAUCUUAAAGUU
.((((--..(((..((((....)))).....)))..)))).((((((((..(((((.((((......)))))))))...))))))))...... ( -24.40)
>DroSec_CAF1 14886 91 + 1
AUCCG--AGUCCUUAAUGCAUGUAUUUAUCUGGAUCUGGGCAGGAUUAUCUGCACAAUAGCCCAUAAGCUGUGUGCCAAAUAAUCUUAAAGUU
.((((--..(((..((((....)))).....)))..)))).((((((((..(((((.((((......)))))))))...))))))))...... ( -24.40)
>DroSim_CAF1 15432 90 + 1
AUCCG--AGUCCUUAAUGCAUGUAUUUAUCUGGAUCUGGGCAGGAUUAUCUGCACAAU-GCCCAUAAGCUGUGUGCCAAAUAAUCUUAAAGUU
.((((--..(((..((((....)))).....)))..)))).((((((((..(((((..-((......))..)))))...))))))))...... ( -21.90)
>DroEre_CAF1 13698 91 + 1
AUCCG--AGUCCUUAAUGCAUGUAUUUAUCUGGAUCUGGGCAGGAUUAUCUGCACAAUGGCCUCUAAGCUGUGUGCCAAAUAAUCUUAAAGUU
.((((--..(((..((((....)))).....)))..)))).((((((((..(((((.((((......)))))))))...))))))))...... ( -23.10)
>DroYak_CAF1 14895 93 + 1
AUACGCAUGUCCUUAAUGCAUGUAUUUAUCUGGAUCUGGGCUGGAUUAUCCGCGCAAUGGCCUCUAAGCUGUGUGUCAAAUAAUCUUCAAGUG
...(((..((((...((.((.((....)).)).))..)))).(((((((..(((((.((((......)))))))))...)))))))....))) ( -18.60)
>consensus
AUCCG__AGUCCUUAAUGCAUGUAUUUAUCUGGAUCUGGGCAGGAUUAUCUGCACAAUAGCCCAUAAGCUGUGUGCCAAAUAAUCUUAAAGUU
........((((...((.((.((....)).)).))..))))((((((((..(((((.((((......)))))))))...))))))))...... (-20.28 = -20.20 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:12 2006