Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,087,888 – 10,087,985 |
Length | 97 |
Max. P | 0.751355 |
Location | 10,087,888 – 10,087,985 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.73 |
Mean single sequence MFE | -43.38 |
Consensus MFE | -34.03 |
Energy contribution | -33.90 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.08 |
Mean z-score | -1.72 |
Structure conservation index | 0.78 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10087888 97 - 22407834 UUUCGGCGGGCAAUGCAGUGGCAUUAGUGGAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGGCCAGGACGU---------UCAGGGUGACCAGGACAAUGCA----------GGAC .((((((((((...((((..((.........))..)))).)))).))).((.((((((....)))))).((---------((.((....)).))))...)).----------))). ( -41.50) >DroSec_CAF1 14517 106 - 1 UUUCGGCGGGCAAUGCAGUGGCAUUAGUGGAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGGCCAGGACGU---------CCAGGGCUACCAGGACAAUGCAGGACA-UCCAGGAC ....(((((((...((((..((.........))..)))).)))).))).((.((((((....)))))).((---------((.((....)).))))...)).((...-.))..... ( -42.80) >DroEre_CAF1 13329 106 - 1 UUUCGGCGGGCAAUGCAGUGGCAUUAGUGAAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGUCCAGGACGA---------CCGGGGCGACCAGGACAAUGCAGGACA-UACAGGAC .((((((((((...((((..((.........))..)))).)))).))).((.((((((.(((((.((....---------)).))))).))))))....)).)))..-........ ( -44.00) >DroYak_CAF1 14498 116 - 1 UUGCGCCGGGCCAUGCAGUGGCAUUAGUGGUGCUGCUGCGGCUUAGCCAGCUUCCUGGACAACCAGGACAACUAGGACAACUAGGACGACCAGGACAAUGCUGAACAAUGCCGGAC ..((((..((((..((((..((((.....))))..))))))))..))((((.((((((....))))))...((((.....))))...............))))......))..... ( -45.20) >consensus UUUCGGCGGGCAAUGCAGUGGCAUUAGUGGAGCUGCUGCGGCUUAGCCAGCUUCCUGGACGGCCAGGACGA_________CCAGGGCGACCAGGACAAUGCAGGACA_U_CAGGAC ....(((((((...((((..((.........))..)))).)))).))).((.((((((....))))))............((.((....)).)).....))............... (-34.03 = -33.90 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:11 2006