Locus 3466

Sequence ID 2L_DroMel_CAF1
Location 10,077,788 – 10,077,885
Length 97
Max. P 0.958242
window5478

overview

Window 8

Location 10,077,788 – 10,077,885
Length 97
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.05
Mean single sequence MFE -39.15
Consensus MFE -22.38
Energy contribution -23.60
Covariance contribution 1.22
Combinations/Pair 1.05
Mean z-score -2.45
Structure conservation index 0.57
SVM decision value 1.49
SVM RNA-class probability 0.958242
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10077788 97 - 22407834
-----ACGGCCACGCCCCUUUUUCCGGUGGUACGGCUUGGGG--GCGCUGGGCUGGCCAAGUGAUUUGCCGGUAAACUG------CUAAACGUGGCUAGGUCGAAAGUCA
-----..((((((((((((....(((......)))...))))--))((.(.((((((.((....)).))))))...).)------).....))))))..(.(....).). ( -43.20)
>DroSec_CAF1 4556 86 - 1
-----AUGGCCACGCCCCUUUUUCCGGUGG---GGUUUAGGGC----------UGGCCAAGUGAUUUGCCGGUAAACUG------CUAAACGUGGCUAGGUCGAAAGUCA
-----.((((((((((((..........))---))).(((.((----------((((.((....)).))))))...)))------......))))))).(.(....).). ( -33.50)
>DroSim_CAF1 4560 98 - 1
-----AUGGCCACGCCCCUUUUUCCGGGGGGA-GGCUUAGGGCUGUGCUAGCCUGGCCAAGUGAUUUGCCGGUAAACUG------CUAAACGUGGCUAGGUCGAAAGUCA
-----.((((((((((((((.....)))))).-((((..((((((...)))))))))).(((..((((....))))..)------))...)))))))).(.(....).). ( -38.70)
>DroEre_CAF1 3523 90 - 1
-----AUGGCCACGCCCCGUUUUCCGGGGGGA-G------GG--GCGCUGGGUUGGCCAAGUGAUUUGCCGGUAAACUG------CUAAACGUGGCUAGGUCGAAAGUCA
-----.((((((((((((....(((....)))-)------))--))((.(.(..(((.((....)).)))..)...).)------).....))))))).(.(....).). ( -35.40)
>DroYak_CAF1 4589 85 - 1
-----AUGGCCACGCCCCUUUUGCCGGGG------------G--GCGCUGUGUUGGCCAAGUGAUUUGCCGGUAAACUG------CUAAACGUGGCUAGGUCGAAAGUCA
-----.((((((((((((((.....))))------------)--))((.((.(((((.((....)).)))))...)).)------).....))))))).(.(....).). ( -35.60)
>DroAna_CAF1 4646 102 - 1
UGGCCACGGCCACGCCCCAAAUGAUAGG-----GGUUUA-GU--CGGAGGGGGUGGCCAAGUGAUUUGCCGGUAAGCGGUGAGCACUAAACGUGGCUAGGUCGAAAGUCA
(((((((((((((.((((...((((...-----......-))--))..)))))))))).((((.((..(((.....)))..))))))....))))))).(.(....).). ( -48.50)
>consensus
_____AUGGCCACGCCCCUUUUUCCGGGGG___GG_UUA_GG__GCGCUGGGCUGGCCAAGUGAUUUGCCGGUAAACUG______CUAAACGUGGCUAGGUCGAAAGUCA
......((((((((((((.......)))).......................(((((.((....)).)))))..................)))))))).(.(....).). (-22.38 = -23.60 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:07 2006