Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,077,015 – 10,077,117 |
Length | 102 |
Max. P | 0.717095 |
Location | 10,077,015 – 10,077,117 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 77.67 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -17.91 |
Energy contribution | -18.57 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.74 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10077015 102 - 22407834 CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGACUUCGUCCUGGCUUCGUCCUGGUUUCGUCCUGCCUUCCCCCUCU-CUCUCUCCCUCUCUCAUCCCCAC ..(((......(((....))).((.((((((((((......((.((......)).))..))))))))))..))......-.............)))....... ( -27.00) >DroSec_CAF1 3796 92 - 1 CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGGCUUCGUCCUGGUUUCGUCUUGGU---------CAUCCCCUCGCUUC--UCUCCCACUCACAUCGCCAC ...........(((....))).((((((((((((....))))))).....((...((.---------.....))..))...--.............))))).. ( -24.20) >DroSim_CAF1 3791 83 - 1 CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGGCUUCGUCCUG-----------GU---------CAUUCCCUCGCUCCUCUCUCUCUCUCACAUCGCCAC ...........(((....))).((((((((((((....)))))))-----------((---------.........))..................))))).. ( -21.00) >consensus CCUGAAAAUAUGCCACAUGGCCGGCGGCAGGACGGCUUCGUCCUGG_UUCGUC_UGGU_________CAUUCCCUCGCU_CUCUCUCCCUCUCACAUCGCCAC ...........(((....))).((((((((((((....)))))))..........((..............)).......................))))).. (-17.91 = -18.57 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:06 2006