Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,076,167 – 10,076,282 |
Length | 115 |
Max. P | 0.860440 |
Location | 10,076,167 – 10,076,270 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -38.42 |
Consensus MFE | -24.52 |
Energy contribution | -24.47 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.30 |
Mean z-score | -1.56 |
Structure conservation index | 0.64 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10076167 103 + 22407834 -----UGACUGCUCC------CGCUGGUCGAGGUUGCCAAUUGGGAGGCCGCGAUGGUCUCCCGAUUCAACGCCGCCGACUGCGUUAGCUGCUGCAGCUUUUUAAUUUGCUGAA -----.....(((..------(((.(((((.(((....((((((((((((.....))))))))))))....)))..))))))))..))).....((((..........)))).. ( -43.10) >DroGri_CAF1 2972 112 + 1 GC--UUGGCUGCCACUGCUGCUGCCUGUCGAUGUGGCCAAUUGCGAAGCCGCAAUUGUCUCGCGGUUCAGCGCCGCAGAUUGCGUUAAAAGCUGCAACUUUUUAAUUUGCUGUA ((--((....((((...((((.(((((....(((((.((((((((....)))))))).).))))...))).)).))))..)).))...)))).((((.........)))).... ( -34.80) >DroWil_CAF1 9490 106 + 1 GC--CUGACUGUUAC------CGCCCGUCGAUGUGGCCAAUUGUGAGGCCGCAAUUGUCUCGCGAUUCAAUGCCGCUGAUUGCGUUAAAAGUUGCAACUUUUUAAUUUGCUGAA ((--..((((.(((.------(((..((((..(((((.(((((((((((.......)))))))))))....))))))))).))).))).))))))................... ( -30.10) >DroMoj_CAF1 4648 112 + 1 GU--CUGGCUGCCGCCGCCGCUGCCUGUCGAUGUGGCCAAUUGUGAGGCAGCAAUUGUCUCGCGGUUCAGCGCCGCAGAUUGCGUUAAAAGUUGCAACUUUUUAAUUUGCUGCA ..--...((((..((((((((...........))))).....(((((((((...)))))))))))).))))((.((((((((....((((((....)))))))))))))).)). ( -39.70) >DroAna_CAF1 3066 108 + 1 GCUUCUGGCUACUGC------CGCUGGUGGAUGUGGCCAAUUGGGAGGCCGCUAUGGUCUCGCGGUUGAGGGCCGCCGAUUGCGUUAGCAGCUGCAGCUUUUUAAUUUGCUGUU (((...(((....))------)(((..((.(.(((((((((((.((((((.....)))))).)))))...))))))....).))..)))))).(((((..........))))). ( -43.40) >DroPer_CAF1 2969 103 + 1 -----UGGCUGCUGC------CGCUUGUCGAUGUGGCCAAUUGUGAGGCCGCAAUUGUCUCGCGGUUCAGCGCCGCUGAUUGCGUUAACAGCUGCAGUUUUUUAAUUUGCUGAA -----.(((.(((((------(((..(.((((((((((........)))))).)))).)..))))..)))))))((.....)).....((((...((((....)))).)))).. ( -39.40) >consensus GC__CUGGCUGCUGC______CGCCUGUCGAUGUGGCCAAUUGUGAGGCCGCAAUUGUCUCGCGGUUCAGCGCCGCAGAUUGCGUUAAAAGCUGCAACUUUUUAAUUUGCUGAA .........(((.((......(((..(((...(((((.(((((((((((.......)))))))))))....))))).))).)))......)).))).................. (-24.52 = -24.47 + -0.05)
Location | 10,076,190 – 10,076,282 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -19.41 |
Energy contribution | -18.97 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.26 |
Mean z-score | -1.67 |
Structure conservation index | 0.69 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10076190 92 + 22407834 UGCCAAUUGGGAGGCCGCGAUGGUCUCCCGAUUCAACGCCGCCGACUGCGUUAGCUGCUGCAGCUUUUUAAUUUGCUGAAAGGA---UAAAUAA-------A ..((((((((((((((.....))))))))))))....((.((..((...))..)).))..((((..........))))...)).---.......-------. ( -29.70) >DroVir_CAF1 2899 88 + 1 GGCCAAUUGCGAGGCCGCAAUUGUCUCGCGGUUCAGCGCCGCAGAUUGCGUUAAAAGUUGCAACUUUUUAAUUUGCUGUAAAAA---UU----GA------- (((((((((((((((.......)))))))))))..).)))((((((((....((((((....))))))))))))))........---..----..------- ( -27.00) >DroGri_CAF1 3004 88 + 1 GGCCAAUUGCGAAGCCGCAAUUGUCUCGCGGUUCAGCGCCGCAGAUUGCGUUAAAAGCUGCAACUUUUUAAUUUGCUGUAAAAA---UC----AA------- (((((((((((....))))))))....((......)))))((((((((....(((((......)))))))))))))........---..----..------- ( -24.60) >DroWil_CAF1 9516 95 + 1 GGCCAAUUGUGAGGCCGCAAUUGUCUCGCGAUUCAAUGCCGCUGAUUGCGUUAAAAGUUGCAACUUUUUAAUUUGCUGAAAGGAAGUUAAGAAA-------A ((((........))))((((((....((((((.((.......)))))))).....))))))...((((((((((.((....)))))))))))).-------. ( -28.20) >DroAna_CAF1 3094 98 + 1 GGCCAAUUGGGAGGCCGCUAUGGUCUCGCGGUUGAGGGCCGCCGAUUGCGUUAGCAGCUGCAGCUUUUUAAUUUGCUGUUGGAA---GAAAUGA-AUCAGAA (((((((((.((((((.....)))))).)))))...))))...((((.((((.......(((((..........))))).....---..)))))-))).... ( -31.94) >DroPer_CAF1 2992 88 + 1 GGCCAAUUGUGAGGCCGCAAUUGUCUCGCGGUUCAGCGCCGCUGAUUGCGUUAACAGCUGCAGUUUUUUAAUUUGCUGAAAGGA---AAAG----------- (((.(((((.(((((.(((.((((..((((((.((((...))))))))))...)))).))).))))).))))).))).......---....----------- ( -27.30) >consensus GGCCAAUUGCGAGGCCGCAAUUGUCUCGCGGUUCAGCGCCGCAGAUUGCGUUAAAAGCUGCAACUUUUUAAUUUGCUGAAAGAA___UAA___A________ (((.(((((((((((.......)))))))))))....))).....(((((........)))))....................................... (-19.41 = -18.97 + -0.44)
Location | 10,076,190 – 10,076,282 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -23.27 |
Consensus MFE | -15.10 |
Energy contribution | -15.43 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.24 |
Mean z-score | -1.43 |
Structure conservation index | 0.65 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663572 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10076190 92 - 22407834 U-------UUAUUUA---UCCUUUCAGCAAAUUAAAAAGCUGCAGCAGCUAACGCAGUCGGCGGCGUUGAAUCGGGAGACCAUCGCGGCCUCCCAAUUGGCA .-------.......---........((...((((...(((((.((.((....)).))..))))).))))...(((((.((.....)).))))).....)). ( -27.40) >DroVir_CAF1 2899 88 - 1 -------UC----AA---UUUUUACAGCAAAUUAAAAAGUUGCAACUUUUAACGCAAUCUGCGGCGCUGAACCGCGAGACAAUUGCGGCCUCGCAAUUGGCC -------..----..---......((((......((((((....))))))..(((.....)))..))))...(....).((((((((....))))))))... ( -23.40) >DroGri_CAF1 3004 88 - 1 -------UU----GA---UUUUUACAGCAAAUUAAAAAGUUGCAGCUUUUAACGCAAUCUGCGGCGCUGAACCGCGAGACAAUUGCGGCUUCGCAAUUGGCC -------..----..---......((((......((((((....))))))..(((.....)))..))))...(....).((((((((....))))))))... ( -24.00) >DroWil_CAF1 9516 95 - 1 U-------UUUCUUAACUUCCUUUCAGCAAAUUAAAAAGUUGCAACUUUUAACGCAAUCAGCGGCAUUGAAUCGCGAGACAAUUGCGGCCUCACAAUUGGCC .-------..............((((((......((((((....))))))..(((.....)))))..))))..((((.....))))((((........)))) ( -18.90) >DroAna_CAF1 3094 98 - 1 UUCUGAU-UCAUUUC---UUCCAACAGCAAAUUAAAAAGCUGCAGCUGCUAACGCAAUCGGCGGCCCUCAACCGCGAGACCAUAGCGGCCUCCCAAUUGGCC .......-.......---........((..........(((((...(((....)))....))))).(((......)))......))((((........)))) ( -23.60) >DroPer_CAF1 2992 88 - 1 -----------CUUU---UCCUUUCAGCAAAUUAAAAAACUGCAGCUGUUAACGCAAUCAGCGGCGCUGAACCGCGAGACAAUUGCGGCCUCACAAUUGGCC -----------....---.......................((((.((((..(((..(((((...)))))...))).)))).))))((((........)))) ( -22.30) >consensus ________U___UUA___UCCUUACAGCAAAUUAAAAAGCUGCAGCUGUUAACGCAAUCAGCGGCGCUGAACCGCGAGACAAUUGCGGCCUCACAAUUGGCC ..........................((((........(((((..........)))))..((((.......)))).......))))((((........)))) (-15.10 = -15.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:05 2006