Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,072,871 – 10,072,972 |
Length | 101 |
Max. P | 0.714112 |
Location | 10,072,871 – 10,072,972 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.10 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -8.58 |
Energy contribution | -11.18 |
Covariance contribution | 2.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 0.35 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10072871 101 - 22407834 CAUCAGUGUUUUGCGGCCCUAUAAAACAAAGCCUUUGAGAGAAGGCUACACUGGAAGAAAUAAGGGGAAAGCGAGAAAGGGAACAAGAGAAAAGGGAACCA ..((....((((((..((((.........(((((((....)))))))........(....)..))))...))))))....))................... ( -24.00) >DroSec_CAF1 8048 100 - 1 CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAGAAGGCUACACUGGGAGAAAUGAAA-AAAAGGGAGUAAGGAAACAAGCGAAAUGGGAACCA ..((..((((((((..((((((.......(((((((....)))))))........(....)....-.)))))).....(....)..)))))))).)).... ( -26.50) >DroSim_CAF1 8058 100 - 1 CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAGAAGGCUACACUGCGAGAAAUGAAA-AAAAGGGCGUAAGGAAACAAGCGAAAUGGGAACCA ..((..((((((((.(((((((.......(((((((....)))))))........(....)....-.)))))))....(....)..)))))))).)).... ( -30.30) >DroEre_CAF1 7938 92 - 1 CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAG---GCUGCACUGGGAGAAAAAA------UACCAGAAAAGGAACAAGAGAACAGGGAAUCA ..((..((((((((((((.((((((........)))))).)---))))).((((.........------..))))............))))))..)).... ( -24.50) >DroYak_CAF1 8146 94 - 1 CAUCUCAGUUUUGCGGCGCUUUAACACAAAGCCUUUGAGUC---ACUGCACUGGGAGAAAAAG-GG---GAGCAAAAAAGGAACAAGUGAAAAGGGAACCA ..(((...((((((...(((((.....)))))((((.(((.---.....))).))))......-..---..))))))..)))................... ( -15.80) >consensus CAUCAGUGUUUUGCGGCCCUUUAAAACAAAGCCUUUGAGAGAAGGCUACACUGGGAGAAAUAA_A__AAAGGGAGAAAGGGAACAAGAGAAAAGGGAACCA ..(((((((((((........))))))..(((((((....)))))))..)))))............................................... ( -8.58 = -11.18 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:02 2006