Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,069,238 – 10,069,340 |
Length | 102 |
Max. P | 0.789759 |
Location | 10,069,238 – 10,069,340 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.33 |
Mean single sequence MFE | -44.10 |
Consensus MFE | -21.34 |
Energy contribution | -21.28 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.25 |
Mean z-score | -1.97 |
Structure conservation index | 0.48 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10069238 102 + 22407834 AUGAUGCUGCAGAUUAGCGGGGCGGCGACGGCGAAGAGGAGCGGCAGAAGCCAACUGAUGCCGAUGGCGCCACGCAUUCCCGC--------CGUCGAACUGGGCGGCGGG------- ..((((((((......))).((((.((.(((((...((....(((....)))..))..))))).)).))))..)))))(((((--------((((......)))))))))------- ( -47.10) >DroPse_CAF1 3983 106 + 1 AUGAUGCUGCAGAUUAGUGGGGCGGCAACUGCGAAGAGAAGCGGCAGCAGCCAGCUAAUGCCAAUGGCGCCACGUAUACCCGC--------CGCU---CCGCCCUGCAGAGACGAAU ......((((((....((((((((((....((........))((((((.....)))...(((...))))))..........))--------))))---)))).))))))........ ( -42.90) >DroGri_CAF1 9428 106 + 1 AUGAUGCUGCAGAUGAGAGGCGCAGCAAUCGCAAACAGCAGCGGCAGCAGCCAACUAAUGCCAAUGGCUCCGCGUAUACCCGC--------UGAG---CCGCUCUGAAGGGCUAAGG ..((((((((...(....)..))))).)))((...(((.(((((((..((....))..))))...(((((.(((......)))--------.)))---))))))))....))..... ( -40.10) >DroWil_CAF1 7813 110 + 1 AUGAUGCUGCAGAUUAGUGGGGCGGCAAUGGCAAAGAGUAGCGGCAGAAGCCAACUGAUGCCAAUGGCGCCACGUAUGCCAGCUUUGCUGCCCUGAAGCGAUGCGGCAGA------- ....(((((((......((((((((((((((((....((.(((((....))).......(((...))))).))...)))))...)))))))))))......)))))))..------- ( -48.50) >DroAna_CAF1 4158 99 + 1 AUGAUGCUGCAGAUUAGUGGGGCGGCCACCGCGAAGAGCAGGGGCAGCAGCCAGCUGAUGCCGAUGGCGCCGCGGAUGCCCGC--------CG---AUCCGGUUGGCAGG------- ......((((.(((..(...(((((.(((((((..(..((..((((.(((....))).))))..)).)..))))).)).))))--------).---..)..))).)))).------- ( -43.10) >DroPer_CAF1 3959 106 + 1 AUGAUGCUGCAGAUUAGUGGGGCGGCAACUGCGAAGAGGAGCGGCAGCAGCCAGCUAAUGCCAAUGGCGCCACGUAUACCCGC--------CGCU---CCGCCCUGCAGAGACGAAU ......((((((....((((((((((....((........))((((((.....)))...(((...))))))..........))--------))))---)))).))))))........ ( -42.90) >consensus AUGAUGCUGCAGAUUAGUGGGGCGGCAACCGCGAAGAGCAGCGGCAGCAGCCAACUAAUGCCAAUGGCGCCACGUAUACCCGC________CGCG___CCGCCCGGCAGA_______ ......((((......((((.((.((....))..........((((..((....))..))))....)).))))..................((......))....))))........ (-21.34 = -21.28 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:01 2006