Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,068,925 – 10,069,017 |
Length | 92 |
Max. P | 0.806486 |
Location | 10,068,925 – 10,069,017 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 82.55 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -23.92 |
Energy contribution | -24.72 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.08 |
Mean z-score | -1.97 |
Structure conservation index | 0.79 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10068925 92 - 22407834 CAU------CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUUGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU ...------.((((((((.....((.((.(((((((((((((......)))))))))).)))))..((((.....))))..))..))))))))..... ( -31.70) >DroSec_CAF1 4074 92 - 1 CAU------CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU ...------.((((((((.....((.((.((((((((((((((...))).)))))))).)))))..((((.....))))..))..))))))))..... ( -30.20) >DroSim_CAF1 4085 92 - 1 CAU------CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU ...------.((((((((.....((.((.((((((((((((((...))).)))))))).)))))..((((.....))))..))..))))))))..... ( -30.20) >DroEre_CAF1 4019 92 - 1 CAC------CAUCCACUGCUCAGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACGGGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU ...------.((((((((...........((((((((((((((...))).)))))))).)))((..((((.....))))..))..))))))))..... ( -30.20) >DroWil_CAF1 7520 75 - 1 UAU------CAUCAA------------UGGGCGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAGCCAGCAGCGGCGGCAGUUACA-UGGAUG---- ...------((((.(------------((((((((((((((((...))).)))))))).......(((.((....))))).))).))-).))))---- ( -23.80) >DroYak_CAF1 4050 98 - 1 CAUCCACCGCAUCCACUGCUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACGAGCAUUGAAAGUGCAAGCAGCAGUGGAUUCAGU ........(.((((((((((...((.((.((((((((((((((...))).)))))))).)))))..((((.....))))..)))))))))))).)... ( -36.10) >consensus CAU______CAUCCACUGGUCGGGCGGUCGAUGAUGAUGUGGCCACGUCAACGUCAUCAAUCACAAGCAUUGGAAGUGCAAGUAACAGUGGAUUCAGU ..........((((((((...........((((((((((((((...))).)))))))).)))....((((.....))))......))))))))..... (-23.92 = -24.72 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:00 2006