Locus 3460

Sequence ID 2L_DroMel_CAF1
Location 10,067,873 – 10,067,967
Length 94
Max. P 0.807000
window5470

overview

Window 0

Location 10,067,873 – 10,067,967
Length 94
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 75.26
Mean single sequence MFE -20.58
Consensus MFE -9.54
Energy contribution -9.26
Covariance contribution -0.28
Combinations/Pair 1.21
Mean z-score -2.05
Structure conservation index 0.46
SVM decision value 0.64
SVM RNA-class probability 0.807000
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10067873 94 - 22407834
------CCUGA------CGACUUAUUUAAGUUGCAUAUUUUAUCAAAGUGUAAAGCCUGCAUAUUUUUACACCUGCCAU----GCCGUGCAAAUUAUGCAUGCAAAGUCA
------.....------.(((((.......((((((...........)))))).((.((((((..(((.(((..((...----)).))).))).)))))).)).))))). ( -19.80)
>DroPse_CAF1 2695 88 - 1
------UC-AA------CGUCUUAUUAAACUUGCAUAUUUCAUCAAAGUGUAGAGCCUGCAUACACUUACAGGUGAC---------GGUGAAAUUAUGCAUGCAAAAACA
------..-..------..............(((((((((((((.(((((((..(....).)))))))...(....)---------))))))).)))))).......... ( -22.20)
>DroGri_CAF1 7860 94 - 1
CUUAGUUU-UU------CGUCUUAUUUCGCGUGCAUAUUUCAUCAAAGUGCAAAGCCUGCAUAUUUUUACGCCUGGC---------ACACAAAUUAUGCAUGCAAAAUCA
........-..------...........(((((((((((((((....))).)))(((.((.((....)).))..)))---------........)))))))))....... ( -19.40)
>DroYak_CAF1 2965 97 - 1
------CC-GA------CGACUUAUUUAAGUUGCAUAUUUUAUCAAAGUGUGAAGCCUGCAUAUUUUUACACCUGCCGCACCAGCCGUGCAAAUUAUGCAUGCAAAAUCA
------..-..------((((((....))))))(((((((.....)))))))..((.((((((.((((((..(((......)))..))).))).)))))).))....... ( -20.60)
>DroAna_CAF1 2850 94 - 1
------CC-GCCAACGCCGCCUUAUUUAAGUUGCAUAUUUCAUCAAAGUGUAGAGCCUGCAUAUUUUUACACCUGACGA----G--GAUGAAAUUAUGCAUGCAAAC---
------..-....................(((((((((((((((...((((((((.........))))))))((....)----)--))))))).)))))).))....--- ( -19.30)
>DroPer_CAF1 2690 88 - 1
------UC-AA------CGUCUUAUUAAACUUGCAUAUUUCAUCAAAGUGUAGAGCCUGCAUACACUUACAGGUGAC---------GGUGAAAUUAUGCAUGCAAAAACA
------..-..------..............(((((((((((((.(((((((..(....).)))))))...(....)---------))))))).)))))).......... ( -22.20)
>consensus
______CC_GA______CGUCUUAUUUAACUUGCAUAUUUCAUCAAAGUGUAAAGCCUGCAUAUUUUUACACCUGAC_________GGUCAAAUUAUGCAUGCAAAAUCA
..............................((((((...........)))))).((.((((((...............................)))))).))....... ( -9.54 =  -9.26 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:59 2006