Locus 3459

Sequence ID 2L_DroMel_CAF1
Location 10,067,414 – 10,067,505
Length 91
Max. P 0.537435
window5469

overview

Window 9

Location 10,067,414 – 10,067,505
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 82.97
Mean single sequence MFE -26.00
Consensus MFE -12.46
Energy contribution -14.10
Covariance contribution 1.64
Combinations/Pair 1.06
Mean z-score -2.34
Structure conservation index 0.48
SVM decision value 0.01
SVM RNA-class probability 0.537435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10067414 91 + 22407834
UAUUUAAUUGGAUUGAGCUGAUUGCUGGGCGUUCUAGGCGCUGAGCAUAAAACCGGA------UGGCUAAAUGCCAUUCCGUUGGCUAGAAAAAUGA
...............(((..(.((((.(((((.....))))).))))......((((------((((.....)))).)))))..))).......... ( -30.50)
>DroSec_CAF1 2595 91 + 1
UAUUUAAUUGGAUUGAGCUGAUUGCUGGGCGUGCUACGCGCAGAGCAUAAAACCGGA------UGGCUAAAUGCCAUUCCGUUGGCUAGAAAAAUGA
...............(((..(.((((..(((((...)))))..))))......((((------((((.....)))).)))))..))).......... ( -28.30)
>DroSim_CAF1 2609 91 + 1
UAUUUAAUUGGAUUGAGCUGAUUGCUGGGCGUGCUACGCGCAGAGCAUAAAACCGGA------UGGCUAAAUGCCAUUCCGUUGGCUAGAAAAAUGA
...............(((..(.((((..(((((...)))))..))))......((((------((((.....)))).)))))..))).......... ( -28.30)
>DroEre_CAF1 2578 79 + 1
UAUUUAAUUGGAUUGAGCUGAUUGCUGGGCGUGC-----GCAGAGCAUAAAA-CGGA------UGGCUAAAUGCCA------UGGCUAGAAAAAUGA
....((((..(......)..))))((((.((((.-----(((.(((......-....------..)))...)))))------)).))))........ ( -19.40)
>DroYak_CAF1 2554 79 + 1
UAUUUAAUUGGAUUGAGCUGAUUGCUGGGCGUGC-----GCGCA--AAAGCA-CGGAGCAUUCUGGUUAAA----G------UGGCUAGAAAAAUGA
..((((((..((.((..(((..((((..(((...-----.))).--..))))-)))..)).))..))))))----.------............... ( -23.50)
>consensus
UAUUUAAUUGGAUUGAGCUGAUUGCUGGGCGUGCUA_GCGCAGAGCAUAAAACCGGA______UGGCUAAAUGCCAUUCCGUUGGCUAGAAAAAUGA
...............((((...((((..((((.....))))..))))................((((.....)))).......)))).......... (-12.46 = -14.10 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:58 2006