| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,057,817 – 10,057,932 |
| Length | 115 |
| Max. P | 0.547471 |
| Location | 10,057,817 – 10,057,932 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.97 |
| Mean single sequence MFE | -42.15 |
| Consensus MFE | -33.89 |
| Energy contribution | -34.78 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10057817 115 - 22407834 UGAGCGGCGACGUUAGAUCCUCGUCGUUGAUGUUGCGCCGCUUGAACAUCUGGUCCUCCUUUUUGGACUUGCGCAGCUCGAUGGUCACCUCAUGGCGGCGCAUGCGUGAGUCCUA----- .(((((((((((((((((....)))..))))))..))))))))........((....)).....(((((..((((((......(((.((....)).))))).))))..)))))..----- ( -42.50) >DroVir_CAF1 153 120 - 1 UCAGAGGCGAGGUCAGAUCUUCAUCGUUGAUGUUACGGCGCUUAAACAUCUGAUCCUCCUUCUUAGACUUGCGCAGCUCGAUGGUCACCUCAUGGCGACGCAUGCGCGAGUCCUAUACGU ..(((((.((((((((((......(((((......))))).......)))))).)))))))))..((((((((((((......(((.((....)).))))).))))))))))........ ( -45.12) >DroGri_CAF1 1 115 - 1 UGAGCGGUGAUGUUAGAUCGUCAUCGUUGAUGUUGCGACGCUUGAACAUCUGAUCCUCCUUCUUCGAUUUGCGCAGCUCUAUGGUCACCUCAUGGCGACGCAUGCGCGAAUCCUA----- ..((((((((((......))))))))))((((((.(((...)))))))))...............((((((((((((......(((.((....)).))))).))))))))))...----- ( -38.90) >DroWil_CAF1 278 117 - 1 UGAGCGGCGAGGUCAGAUCUUCAUCGUUGAUGUUGCGGCGCUUGAACAUCUGGUCCUCCUUUUUGGACUUGCGAAGCUCUAUGGUCACCUCAUGACGACGCACACGCGAGUCCUACC--- .(((.((.((((((((((.((((.(((((......)))))..)))).)))))).)))))).)))(((((((((..((((....((((.....)))))).))...)))))))))....--- ( -41.30) >DroMoj_CAF1 1 115 - 1 UCAACGGUGAGGUUAGGUCCUCAUCAUUGAUGUUGCGGCGCUUGAACAACUGGUCCUCCUUCUUUGACUUGCGCAGCUCGAUGGUCACCUCAUGGCGACGCAUGCGCGAGUCCUA----- ((((.(((((((......))))))).))))......((.(((.........))))).........((((((((((((......(((.((....)).))))).))))))))))...----- ( -38.30) >DroAna_CAF1 1 115 - 1 UGAGGGGCGAGGUAAGAUCCUCGUCGUUGAUGUUUCGUCGUUUGAACAUCUGAUCCUCCUUCUUCGACUUGCGCAGCUCAAUGGUCACCUCAUGGCGACGCAUGCGCGAGUCCUA----- .(((((((((((......)))))))...(((((((........)))))))....)))).......((((((((((((......(((.((....)).))))).))))))))))...----- ( -46.80) >consensus UGAGCGGCGAGGUUAGAUCCUCAUCGUUGAUGUUGCGGCGCUUGAACAUCUGAUCCUCCUUCUUCGACUUGCGCAGCUCGAUGGUCACCUCAUGGCGACGCAUGCGCGAGUCCUA_____ .(((.((.((((((((((..(((.(((((......)))))..)))..)))))).)))))).))).((((((((((((......(((.((....)).))))).))))))))))........ (-33.89 = -34.78 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:55 2006