Locus 3455

Sequence ID 2L_DroMel_CAF1
Location 10,056,604 – 10,056,705
Length 101
Max. P 0.541806
window5464

overview

Window 4

Location 10,056,604 – 10,056,705
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 86.24
Mean single sequence MFE -27.04
Consensus MFE -17.32
Energy contribution -16.80
Covariance contribution -0.52
Combinations/Pair 1.26
Mean z-score -2.02
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.541806
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10056604 101 + 22407834
UGCAGAUUCAGCCGACUUCUAUUCAGCUGUUGGCUGAAUUUGGCUUGCAUGCGCACACGUUCCACGUUCCACAACAACAUAUUGAAAUCCAAAAGCUGCUU
..((((((((((((((..((....))..))))))))))))))....(((.((....(((.....)))..............(((.....)))..))))).. ( -28.20)
>DroSec_CAF1 51414 101 + 1
UGCAGAUUCAGCCAACUUCUAUUCAGCUGUUGGCUGAAUUUGGCUUGCAUGCGCACACGUUCCACGUUCCACAACAACAUAUUGAAAUCCAAAAGCAGCUU
..((((((((((((((..((....))..))))))))))))))(((.((.((.(...(((.....)))..).))........(((.....)))..))))).. ( -28.70)
>DroSim_CAF1 54758 101 + 1
UACAGAUUCAGCCAACUUCUAUUCAGCUGUUAGCUGAAUUCGGCUUGCAUGCGCACACGUUCCACGUUCCACAACAACAUAUUGAAAUACAAAAGCAGCUU
..(..(((((((.(((..((....))..))).)))))))..)((((((....))..(((.....))).........................))))..... ( -18.50)
>DroEre_CAF1 53135 101 + 1
UGCAGAUUCAGCCGGUUUCUAUUCAGCUGUUAGCUGGAUGUGGCUUGCAUGCGCACACGUUCCACGUUCCACAAAGACAUAAUGGAACUCAAAAGCAGCUC
.((.......((.((((..((((((((.....)))))))).)))).)).(((......((((((.(((.......)))....))))))......))))).. ( -25.80)
>DroYak_CAF1 53341 94 + 1
UGCAGAUUCAGCCGCUUUCUGUUCAGCUGUUUGCUGAAUGUGGCCUGCAUGCGCACACGU-------UCCACAAACACAUGAUGGAACGCAAAAGCAGGUC
(((((.....(((((.....(((((((.....)))))))))))))))))(((.....(((-------((((((......)).))))))).....))).... ( -34.00)
>consensus
UGCAGAUUCAGCCGACUUCUAUUCAGCUGUUAGCUGAAUUUGGCUUGCAUGCGCACACGUUCCACGUUCCACAACAACAUAUUGAAAUCCAAAAGCAGCUU
......(((((((((.....(((((((.....)))))))))))).(((....)))...........................))))............... (-17.32 = -16.80 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:53 2006