Locus 3454

Sequence ID 2L_DroMel_CAF1
Location 10,053,001 – 10,053,104
Length 103
Max. P 0.677066
window5463

overview

Window 3

Location 10,053,001 – 10,053,104
Length 103
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -24.88
Consensus MFE -20.06
Energy contribution -20.14
Covariance contribution 0.08
Combinations/Pair 1.14
Mean z-score -1.31
Structure conservation index 0.81
SVM decision value 0.30
SVM RNA-class probability 0.677066
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10053001 103 - 22407834
CACAAUUGUCUCCGGAUGGCUGUGAACAAUGAGGCAUCGAGAGAUCCCCGUUCAAUGACUCUCCCCCACCCCCCUCCCCCUUGGCGAAGGCACACACAA-AAAU
.....((((....(((.((..(((......(.((.(((....))).)))(((....))).......)))..)).)))....((((....)).)).))))-.... ( -18.60)
>DroSec_CAF1 47954 90 - 1
CACAAUUGUCUCCGGAUGGCUGUGAACAAUGAGCCAUCGAGAGAUCGCCGUUCAAUGACUCC--------------CCCCUUUCUGGAGGCACACACAGAAAAU
......((((((((((.((..((.(..((((.((.(((....))).))))))...).))..)--------------).....))))))))))............ ( -25.50)
>DroSim_CAF1 51188 90 - 1
CACAAUUGUCUCCGGAUGGCUGUGAACAAUGAGCCAUCGAGAGAUCGCCGUUCAAUGACUCC--------------CCCCUUUCUGGAGGCACACACAAAAAAU
......((((((((((.((..((.(..((((.((.(((....))).))))))...).))..)--------------).....))))))))))............ ( -25.50)
>DroEre_CAF1 49521 97 - 1
CACAAUUGUCUCCGGAUGGCCGUAAACAAUGGGCCAUCAAGAGAUCGCCGUUCAAUGACUCCCC-CCACCCCAAC--CCCCCUCUGGAGGCA---AG-AGGAAU
..(..((((((((((((((((..........)))))))..(((.(((........))))))...-..........--.......))))))))---).-.).... ( -27.60)
>DroYak_CAF1 49595 88 - 1
CACAAUUGUCUCCGUAUGGCGGUAAACAAUGAGCCAUCGAGAGAUCGCCGUUCAAUGACUGCCC-CU-----------UCCUUCUGGAGGCA---AG-AAGAAU
.....(((((((((...((((((....((((.((.(((....))).)))))).....)))))).-..-----------......))))))))---).-...... ( -27.20)
>consensus
CACAAUUGUCUCCGGAUGGCUGUGAACAAUGAGCCAUCGAGAGAUCGCCGUUCAAUGACUCCCC_C__________CCCCUUUCUGGAGGCACACACAAAAAAU
......((((((((((.((..(....)((((.((.(((....))).))))))...........................)).))))))))))............ (-20.06 = -20.14 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:52 2006