Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,052,242 – 10,052,346 |
Length | 104 |
Max. P | 0.609842 |
Location | 10,052,242 – 10,052,346 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 89.57 |
Mean single sequence MFE | -35.22 |
Consensus MFE | -25.94 |
Energy contribution | -25.74 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.73 |
Structure conservation index | 0.74 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10052242 104 - 22407834 AUCCGCACUCGGCUUUUUAAUUAAUUUAGACAGGUACGUCGACUGUCGGUGGGGGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG------------GCGGAAG .(((((.(((.....((((((((.....(((((.........)))))...(((((((....((((.......))))...))))))))))))))))))------------))))).. ( -33.40) >DroSec_CAF1 47244 102 - 1 AUCUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGUG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG------------GCGGAAG .(((((.(((.(((((((((.....))))).))))..((((..((((((.(--((((.......))).)).)))))).)))).(((.....))))))------------))))).. ( -29.90) >DroSim_CAF1 50443 102 - 1 AUCUGCACUCGUCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGUG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG------------GCGGAAG .(((((((..((((.............))))..))))((((..((((((.(--((((.......))).)).)))))).))))(((((......))))------------).))).. ( -31.82) >DroEre_CAF1 48716 114 - 1 AUUUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGAG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAGGCAUCGCGGGAGGCGGAAA .(((((..((.((..(((((.....)))))..(((((((((..((((((((--((((.......))).))))))))).))))((((.....))))..))))))).))..))))).. ( -40.70) >DroYak_CAF1 48763 114 - 1 AUUUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGAG--GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAGGCAUCGCGGCAGGCGGAAU .(((((.(((.((..(((((.....)))))..(((((((((..((((((((--((((.......))).))))))))).))))((((.....))))..))))))).).))))))).. ( -40.30) >consensus AUCUGCACUCGGCUUUUUAAUUAAUUUAGACAGGUGCGUCGGCUGUCGGUG__GGUUAAUAGUCAACACUUCUGGCAACGACCCUCUAAUUGAGGAG____________GCGGAAG .(((((..((((((..((((((......(((((.(.....).)))))......)))))).)))).........(....))).((((.....))))..............))))).. (-25.94 = -25.74 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:51 2006