Locus 3450

Sequence ID 2L_DroMel_CAF1
Location 10,043,500 – 10,043,605
Length 105
Max. P 0.895777
window5458

overview

Window 8

Location 10,043,500 – 10,043,605
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.97
Mean single sequence MFE -25.18
Consensus MFE -19.94
Energy contribution -20.14
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.93
Structure conservation index 0.79
SVM decision value 0.99
SVM RNA-class probability 0.895777
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10043500 105 + 22407834
CUCUUGGUAGUAGUUUAGUAGCCAUUUUAUUGUUUUUUAACUACUUGCCGUAACUUUAUUUUGGCGAAUCUAGACGUUCUCCUUGCUGAUAUGGCGGCACCACUC
....(((((((((((....(((.........)))....))))))).(((((....(((.(..((.((((......)))).))..).)))....)))))))))... ( -23.90)
>DroSec_CAF1 39139 105 + 1
CUCUUGGUAGUAGUUUAGUAGUCGUUUUAUUGUUUAUUAACUACUUGCCAUAACUUUAUUCUGGCGAAUCUAGACGUUCUCCUUGCUGAUAUGGCGGCACCACUC
....(((((((((((.(((((.((......)).))))))))))))(((((((.(..((....((.((((......)))).)).))..).)))))))..))))... ( -23.90)
>DroSim_CAF1 41560 105 + 1
CUCUUGGUAGUAGUUUAGUAGCCAUUUUAUUGUUUAUUAACUACUUGCCGUAACUUUAUUCUGGCGAAUCUAGAGGUUCUCCUUGCUGAUAUGGCGGCACCACUC
....(((((((((((.(((((.((......)).)))))))))))).(((((....(((....((.(((((....))))).))....)))....)))))))))... ( -29.40)
>DroEre_CAF1 39180 101 + 1
CCCUUGGCAGUAGUUUA---GCUAUUUUAUUGUUUUUUAACUACUUGCCGUAACUUUAUU-UGGCGAAUCUAGCAGUUCUCCCUGCUGAUAUGGCGGCACCACUC
....(((.(((((((.(---((.........)))....)))))))((((((..((.....-.))((.(((.(((((......)))))))).)))))))))))... ( -24.60)
>DroYak_CAF1 39866 101 + 1
CUCGUGGUAGUAGUUUA---GCUAUUUUAUUGUUUUUUAACAACUUGCCGUAACUUUAUU-UGGCGAAUCUAGCAGUUCUCCUUGCUGAUAUGGCGGCACCACUC
...(((((.((......---(((((....(((((....))))).((((((..........-))))))(((.(((((......))))))))))))).))))))).. ( -24.10)
>consensus
CUCUUGGUAGUAGUUUAGUAGCCAUUUUAUUGUUUUUUAACUACUUGCCGUAACUUUAUU_UGGCGAAUCUAGAAGUUCUCCUUGCUGAUAUGGCGGCACCACUC
....(((((((((((.......((......))......))))))).(((((....(((....((.((((......)))).))....)))....)))))))))... (-19.94 = -20.14 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:47 2006