Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,046,061 – 1,046,248 |
Length | 187 |
Max. P | 0.981284 |
Location | 1,046,061 – 1,046,154 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.45 |
Mean single sequence MFE | -28.24 |
Consensus MFE | -16.70 |
Energy contribution | -17.92 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.14 |
Mean z-score | -1.89 |
Structure conservation index | 0.59 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1046061 93 + 22407834 GUCCGUGAAUGGGUCACCAUAUCG---CCCUGACAUUAUUAUGCCAGCUUUCCGCUGGUCUAU------------------------UUGUGGGUGUGACAUGACCAUUCAAGCUUUUUG ((...(((((((.(((......((---(((..(((....((.((((((.....)))))).)).------------------------.)))))))).....)))))))))).))...... ( -29.70) >DroSec_CAF1 28268 93 + 1 GUCCGUGAAUGGGUCACCAUAUCC---CCCUGACAUUAUUAUGCCAGCUUUCUGCUGGUCUAU------------------------UUGUGGGUGUGACAUGACCAUUCAAUCUUUUUG .....(((((((.(((.(((((((---.....(((....((.((((((.....)))))).)).------------------------.))))))))))...))))))))))......... ( -28.80) >DroSim_CAF1 20060 93 + 1 GUCCGCGAAUGGGUCACCAUAUCC---CCCUGACAUUAUUAUGCCAGCUUUCUGCUGGUCUAU------------------------UUGUGGGUGCGACAUGACCAUUAAAUCUUUUUG .(((((((((((((((........---...))))........((((((.....))))))))))------------------------))))))).......................... ( -25.20) >DroEre_CAF1 25544 72 + 1 -----GUAGUGGGUCACCAUAUCU------------------CCCAGCUUUUCGCUGGUCUGA------------------------UUGUGGGUGUGAAAUUACCAUUCAAGCU-UUGG -----(((((....((((..(((.------------------.(((((.....)))))...))------------------------)....))))....)))))..........-.... ( -19.40) >DroYak_CAF1 27603 120 + 1 GUCCGUGAAUGGGUCACCACCUCUUUUCCGUGACAUUAUUAUGCCAGCUUUCCGCUGGUCUGCUGGUGGGAUUGUGGGUUUGUGGGUUUGUGGGUGUGAAAUUACCAUUCAAGCUCUUUG (((((.(((.((((....))))...))))).)))........(((.((.((((((..(....)..))))))..)).)))....(((((((..((((......))))...))))))).... ( -38.10) >consensus GUCCGUGAAUGGGUCACCAUAUCC___CCCUGACAUUAUUAUGCCAGCUUUCCGCUGGUCUAU________________________UUGUGGGUGUGACAUGACCAUUCAAGCUUUUUG .....(((((((.....(((((((.........(((....)))(((((.....))))).................................)))))))......)))))))......... (-16.70 = -17.92 + 1.22)
Location | 1,046,061 – 1,046,154 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.45 |
Mean single sequence MFE | -23.12 |
Consensus MFE | -17.46 |
Energy contribution | -19.46 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.61 |
Structure conservation index | 0.76 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1046061 93 - 22407834 CAAAAAGCUUGAAUGGUCAUGUCACACCCACAA------------------------AUAGACCAGCGGAAAGCUGGCAUAAUAAUGUCAGGG---CGAUAUGGUGACCCAUUCACGGAC .......(.((((((((((((((...((((((.------------------------.((..(((((.....)))))..))....)))..)))---.)))))))....))))))).)... ( -26.40) >DroSec_CAF1 28268 93 - 1 CAAAAAGAUUGAAUGGUCAUGUCACACCCACAA------------------------AUAGACCAGCAGAAAGCUGGCAUAAUAAUGUCAGGG---GGAUAUGGUGACCCAUUCACGGAC .........((((((((((((((...((((((.------------------------.((..(((((.....)))))..))....)))..)))---.)))))))....)))))))..... ( -27.70) >DroSim_CAF1 20060 93 - 1 CAAAAAGAUUUAAUGGUCAUGUCGCACCCACAA------------------------AUAGACCAGCAGAAAGCUGGCAUAAUAAUGUCAGGG---GGAUAUGGUGACCCAUUCGCGGAC ......((((....))))...((((.((((((.------------------------.((..(((((.....)))))..))....)))..)))---((((..(....)..)))))))).. ( -22.40) >DroEre_CAF1 25544 72 - 1 CCAA-AGCUUGAAUGGUAAUUUCACACCCACAA------------------------UCAGACCAGCGAAAAGCUGGG------------------AGAUAUGGUGACCCACUAC----- ....-....((((.......))))((((....(------------------------((...(((((.....))))).------------------.)))..)))).........----- ( -16.10) >DroYak_CAF1 27603 120 - 1 CAAAGAGCUUGAAUGGUAAUUUCACACCCACAAACCCACAAACCCACAAUCCCACCAGCAGACCAGCGGAAAGCUGGCAUAAUAAUGUCACGGAAAAGAGGUGGUGACCCAUUCACGGAC .......(.(((((((.....(((((((.......((.................((.((......))))...(.((((((....)))))))))......))).)))).))))))).)... ( -23.02) >consensus CAAAAAGCUUGAAUGGUCAUGUCACACCCACAA________________________AUAGACCAGCGGAAAGCUGGCAUAAUAAUGUCAGGG___AGAUAUGGUGACCCAUUCACGGAC .........(((((((....(((((.....................................(((((.....))))).......(((((........))))).))))))))))))..... (-17.46 = -19.46 + 2.00)
Location | 1,046,154 – 1,046,248 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 75.89 |
Mean single sequence MFE | -24.16 |
Consensus MFE | -17.40 |
Energy contribution | -18.36 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.23 |
Mean z-score | -1.34 |
Structure conservation index | 0.72 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1046154 94 + 22407834 UCUCAGGUCAACGAGGUGCCUCGAAUUGUUAUUCAGUUGACCAGACC------------------UUAACUGCAGGCAAAUAAAUCAUGUUUGCAAAUGCCCAUUUAUGGGA (((((((((((((((....)))((((....)))).))))))).....------------------......(((.(((((((.....)))))))...))).......))))) ( -30.80) >DroSec_CAF1 28361 92 + 1 UCUCAGGUCAACGAGGUGCCUCGAAUUGGAACUCAGUUGACCAGACC------------------UUAUCUGCAGUCAAAUAAAUCAUGAUUGCAAUUGCCCAUUUCUGU-- .....((((((((((...((.......))..))).))))))).....------------------.....((((((((.........))))))))...............-- ( -25.80) >DroSim_CAF1 20153 92 + 1 UCUCAGGCCAGCGAGGUGCCUCGAAUUGGGACUCAGUUGACCAGACC------------------UUAUCUGCAGUCAAAUAAAUCAUGAUUGCAAUUGCCCAUUUCUGU-- .....(((((((..(((.((.......)).)))..))))........------------------.....((((((((.........))))))))...))).........-- ( -23.00) >DroEre_CAF1 25616 97 + 1 UCCCAGGUAAACGAGGUGCCUCGAAUUAUAAUUCAGUUGGC---------------AAGAUAUGUGUAUCUGCGGUCAAAUAUCUCAUGCUCGCAAUUGCCCAAUUAGGUGA .....(((((.((((....))))............((.(((---------------(((((((.((.((.....)))).))))))..)))).))..)))))........... ( -21.50) >DroYak_CAF1 27723 112 + 1 UCUCAGCUUAACGAGGUGCCUCGAAUUAUAAUUCAGUUGGCCAGACCAUAAUAGCCAAGAUAUGUUUACCUGCAGUCAAAUAUAUCAUGUUCGCAAUUGCCCAAUUACGUGA .....((.....(((....)))((((..........(((((.(........).)))))(((((((((..(....)..)))))))))..)))))).................. ( -19.70) >consensus UCUCAGGUCAACGAGGUGCCUCGAAUUGUAAUUCAGUUGACCAGACC__________________UUAUCUGCAGUCAAAUAAAUCAUGAUUGCAAUUGCCCAUUUAUGUGA .....((((((((((....)))((((....)))).)))))))............................((((((((.........))))))))................. (-17.40 = -18.36 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:34 2006