Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,043,343 – 10,043,461 |
Length | 118 |
Max. P | 0.981228 |
Location | 10,043,343 – 10,043,461 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -24.10 |
Energy contribution | -25.14 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.02 |
Mean z-score | -1.64 |
Structure conservation index | 0.93 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10043343 118 - 22407834 UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCCAAAGGACUGACGUU ...(((((.((((((((....))))).)))..((-(((((...))))))).......)))))...(((((((..((((.((((((((....))))))))..))))...))))))).... ( -28.80) >DroSec_CAF1 38981 119 - 1 UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUUGUGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGGUUAAAAAUGAAUGCAUUUAUUUUGCAGCCAAAGGACUGACGUU ...(((((.((((((((....))))).))).(((.(((((...))))).))).....)))))...(((((((..((((.((((((((....))))))))..))))...))))))).... ( -31.80) >DroSim_CAF1 41403 118 - 1 UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGUUUAAAAAUGAAUGCAUUUAUUUUGCAGCCAAAGGACUGACGUU ...(((((.((((((((....))))).)))..((-(((((...))))))).......)))))...(((((((.((((....))))..((((.......))))......))))))).... ( -25.10) >DroEre_CAF1 39023 118 - 1 UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCACUCUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCGUAAGGACUGACGUC ...(((((.((((((((....))))).)))..((-(((((...))))))).......)))))......(..((((.(..((((((((....))))))))..).))))..)......... ( -23.30) >DroYak_CAF1 39709 118 - 1 UAAUUAAAAGUGGCAAAAACUUUUCCACAGAGUU-UGGACUUUGUCCAGAACAGACAUUUAAAUUUCACUUUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCCAAGGGACUGACGUC ......(((((((...(((((((.....))))))-)((((...))))..................)))))))..((((.((((((((....))))))))..))))....(((....))) ( -21.10) >consensus UAAUUAAAAGUGGCAAAAACUUUUGCACACAGUU_UGGACUUUGUCCAGAACAGACAUUUAAAUUUCAGUUUACGGUUAAAAAUGAAUGUAUUUAUUUUGCAGCCAAAGGACUGACGUU ...(((((.((((((((....))))).))).(((.(((((...))))).))).....)))))...(((((((..((((.((((((((....))))))))..))))...))))))).... (-24.10 = -25.14 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:46 2006