Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,034,635 – 10,034,827 |
Length | 192 |
Max. P | 0.709775 |
Location | 10,034,635 – 10,034,737 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.06 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -20.09 |
Energy contribution | -20.52 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.60 |
Structure conservation index | 0.83 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10034635 102 + 22407834 GUCGAAAAAAGCCAGGCCCAAACCGCAUAGGCCACGCUUCGCUUGACUCGUUCGCCGGGCUGCGAAAUAAAAAAAAAAAAAACGGAGGGUCAUAAAAAUGAA ..............(((((...((((....)).....(((((..(.((((.....))))).))))).................)).)))))........... ( -20.10) >DroSim_CAF1 32933 86 + 1 GUCGAAAAAUGCCAGGCCCAAACCACAUAGGCCACGCUCCGCUUGA---------CGGGCUGUGAAAUAAAAAAA-------AGGGGGGCCAUAAAAAUGAA ..............(((((...((.....)).(((((.(((.....---------))))).)))...........-------....)))))........... ( -20.80) >DroEre_CAF1 30419 93 + 1 GUCCAAAAAAGCCAGGCCCAAACCACAUAGGCCACGCUCCGCUUGGCUCACUCGCUGUGCUGCGAAAUAAAAAA--------C-GGGGGCCAUAAAAAUGAA ..............(((((...((.....(((((.((...)).)))))...((((......)))).........--------.-)))))))........... ( -25.30) >DroYak_CAF1 31021 95 + 1 GCCCAAAAAAGCCAGGCCCAAACCGCAUAGGCCACGCUUCGCUUGGCUCACUCGCUGUGCGGCGAUAUAAAAAAA-------CGGGGGGCCAUAAAAAUGAA ..............(((((...(((....(((((.((...)).)))))...(((((....)))))..........-------))).)))))........... ( -30.20) >consensus GUCCAAAAAAGCCAGGCCCAAACCACAUAGGCCACGCUCCGCUUGACUCACUCGCCGGGCUGCGAAAUAAAAAAA_______CGGGGGGCCAUAAAAAUGAA ..............(((((...((.....))...(((...(((((((......))))))).)))......................)))))........... (-20.09 = -20.52 + 0.44)
Location | 10,034,737 – 10,034,827 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -14.62 |
Consensus MFE | -11.86 |
Energy contribution | -11.86 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.81 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628142 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10034737 90 - 22407834 UUUU-CCCAGCCAUUCUUUAA---UAAUUGCCU-GAAAUGGCUUUUCCCCCAAGGGCAUUUCCCUUACGACCUGCUCCUGAAUAGGUAUUUUCCU ....-....(((((((.....---.....(((.-.....)))..........((((((..((......))..))).))))))).)))........ ( -16.70) >DroSec_CAF1 30657 88 - 1 UUUU-CCC--CCUUUCCUUAA---UAAUUGCCU-CAAAUGGCUUUUCCCCCAAGGGCAUUUCCCUUACGACCUGCUCCUGAAUAGGUAUUGUCCU ....-...--((((((.....---.....(((.-.....)))..........((((((..((......))..))).)))))).)))......... ( -14.00) >DroSim_CAF1 33019 88 - 1 UUUC-CCC--CCUUUCUUUAA---UAAUUGCCU-CAAAUGGCUUUUCCCCCAAGGGCAUUUCCCUUACGACCUGCUCCUGAAUAGGUAUUGUCCU ....-...--((((((.....---.....(((.-.....)))..........((((((..((......))..))).)))))).)))......... ( -14.40) >DroEre_CAF1 30512 91 - 1 UUUU-UCU--CAUUUCCUUAAUAAUAAUUGCCUGUAAAUGG-UUUUCCCCCAAGGGCAUUUCCCUUACGACCUGCUCCUGAAUAGGUAUUGUCCU ....-...--.............(((((.((((((...(((-.......)))((((((..((......))..))).)))..)))))))))))... ( -15.40) >DroYak_CAF1 31116 88 - 1 UGUUUCCU--CGUUUCUUUAG---UAAUUGCCU-CAAAUGG-UUUUCCCCCAAGGGCAUUUCCCUUACGACCUGCUCCUGAAUAGGUAUUGUCCU .....(((--...(((...((---((...(((.-.....))-)........(((((.....)))))......))))...))).)))......... ( -12.60) >consensus UUUU_CCC__CCUUUCUUUAA___UAAUUGCCU_CAAAUGGCUUUUCCCCCAAGGGCAUUUCCCUUACGACCUGCUCCUGAAUAGGUAUUGUCCU ............................(((((.....(((........)))((((((..((......))..))).)))....)))))....... (-11.86 = -11.86 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:42 2006