Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,030,555 – 10,030,671 |
Length | 116 |
Max. P | 0.561060 |
Location | 10,030,555 – 10,030,671 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.95 |
Mean single sequence MFE | -28.19 |
Consensus MFE | -19.89 |
Energy contribution | -19.75 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -1.41 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561060 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10030555 116 + 22407834 GCAGUGCCAUUUCCAUGGCCAUUAUAUUCAAUUAUACGACAAUAAUGUGGCGCUUAGGGCGCUGCGGUUCACGGGAAUUGAAAAUAAUAAUAAUAUGGGGCGGCGGGGGGGUGUUG .(((..((.(..((.(.((((((((.(((((((...((.......((..((((.....))))..)).....))..))))))).)))))..........))).).))..)))..))) ( -36.50) >DroPse_CAF1 24622 94 + 1 ------------CCAUUGCCAUUAUAUUCAAUUAUACGACAAUAACGUGGCGCUUAGGGCGCUGCGGUUACCAGAAAUUGAAAAUAAUAAUAAAGCGG--------AGGAGGAU-- ------------((.((((.(((((.(((((((............((..((((.....))))..)).........))))))).)))))......))))--------.)).....-- ( -22.00) >DroSim_CAF1 27839 108 + 1 GCAGUGCCAUUUCCAUGGCCAUUAUAUUCAAUUAUACGACAAUAACGUGGCGCUUAGGGCGCUGCGGUUCACGGGAAUUGAAAAUAAUAAUAAAAUGG--------GGGGUUGUUU (((..(((...(((((....(((((.(((((((...((.......((..((((.....))))..)).....))..))))))).)))))......))))--------).)))))).. ( -30.30) >DroEre_CAF1 26240 107 + 1 GCAGUGCCAUUUCCAUGGCCAUUAUAUUCAAUUAUACGACAAUAACGUGGCGCUUAGGGCGCUGCGGUUCACGGGAAUUGAAAAUAAUAAUAAUGUGG--------GGGGU-GUAG ...(..((...((((((...(((((.(((((((...((.......((..((((.....))))..)).....))..))))))).))))).....)))))--------).)).-.).. ( -31.60) >DroAna_CAF1 26857 107 + 1 GCAGCGUCAUUUCCAUGGCCAUUAUAUUCAAUUAUACGACAAUAACGUGGCGCUUAGGGCGCUGCGGUUCACAGGAAUUGAAAAUAAUAAUAAAGCGA--------AGGGA-CCAG ((.(.(((((....))))))(((((.(((((((...(........((..((((.....))))..)).......).))))))).)))))......))..--------.....-.... ( -26.76) >DroPer_CAF1 25513 94 + 1 ------------CCAUUGCCAUUAUAUUCAAUUAUACGACAAUAACGUGGCGCUUAGGGCGCUGCGGUUACCAGAAAUUGAAAAUAAUAAUAAAGCGG--------AGGAGGAU-- ------------((.((((.(((((.(((((((............((..((((.....))))..)).........))))))).)))))......))))--------.)).....-- ( -22.00) >consensus GCAGUGCCAUUUCCAUGGCCAUUAUAUUCAAUUAUACGACAAUAACGUGGCGCUUAGGGCGCUGCGGUUCACAGGAAUUGAAAAUAAUAAUAAAGCGG________AGGGG_GU_G ....................(((((.(((((((............((..((((.....))))..)).........))))))).)))))............................ (-19.89 = -19.75 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:40 2006