Locus 3444

Sequence ID 2L_DroMel_CAF1
Location 10,028,019 – 10,028,112
Length 93
Max. P 0.558116
window5450

overview

Window 0

Location 10,028,019 – 10,028,112
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 71.83
Mean single sequence MFE -31.35
Consensus MFE -8.98
Energy contribution -9.15
Covariance contribution 0.17
Combinations/Pair 1.59
Mean z-score -2.09
Structure conservation index 0.29
SVM decision value 0.05
SVM RNA-class probability 0.558116
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10028019 93 - 22407834
CACCAAUAGACCUGUUUGUAAAGGA--CUC-CUCUGCAGGAGCCUUUGGGGAUGACCUCUUC--AACGAACGCAAAGUUCGACUGCAGACGGGUAUAA
.........(((((((((((((((.--(((-((....))))))))))((((....))))...--..(((((.....)))))...)))))))))).... ( -35.00)
>DroSec_CAF1 24225 93 - 1
CACCAAUGGACCGGUUUGUGAAGGA--CUU-CUCUACAGGAGCCUUUGGGGGUGACCUCUUC--AACGAACGCAAAGUUCGACUGCAGGCGGGAAUAA
..........((.(((((((((((.--(((-((....))))))))))((((....))))...--..(((((.....)))))...)))))).))..... ( -33.00)
>DroSim_CAF1 25387 93 - 1
CACCAAUAGACUUGUUUGUGAAGGA--CUC-CUCUGCAGGAGCCUUUGGGGGUGACCUCUUC--AACGAACGCAAAGUUCGACUGCAGACGGGAAUAA
..........((((((((((((((.--(((-((....))))))))))((((....))))...--..(((((.....)))))...)))))))))..... ( -35.70)
>DroEre_CAF1 23831 93 - 1
CACCAGUAGUCCUGAUUGUGAAGGU--CUC-UUCCUCAGGACACUUUGUGGAUGAUCGUUUC--AAACAACGCAAAGUUCGACUGCAAGCAGGAAUAA
...((((.(((((((..(.((((..--..)-)))))))))))((((((((..(((.....))--).....))))))))...))))............. ( -25.40)
>DroYak_CAF1 24432 93 - 1
CAGCAAUAGUGCUGUUGGUGAAGGU--CUC-CUCUUCAGGACACUUUGUGGCUGAUCUUUUC--AGACAACGCAGAGUUCGACUGCAAGCGGGAAUAA
((.(((((....))))).))...((--..(-(.((((((...((((((((.((((.....))--))....))))))))....))).))).))..)).. ( -28.30)
>DroPer_CAF1 23363 90 - 1
CCUGGCCGGUCCUUGUGGUAAAACAGUCUCUCUCUU-----GCUCU---AGCGGGUCUUUACGCGGACACUGGAGAGUCCGACUACAGGGCGGAAUGA
.....(((..(((((((((......(.((((((..(-----(.(((---.(((........))))))))..)))))).)..))))))))))))..... ( -30.70)
>consensus
CACCAAUAGACCUGUUUGUGAAGGA__CUC_CUCUUCAGGAGCCUUUGGGGAUGACCUCUUC__AAACAACGCAAAGUUCGACUGCAGGCGGGAAUAA
......((.(((((((((((...........(((.....))).(((((.(....................).)))))......))))))))))).)). ( -8.98 =  -9.15 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:39 2006