Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,015,430 – 10,015,525 |
Length | 95 |
Max. P | 0.952926 |
Location | 10,015,430 – 10,015,525 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 76.14 |
Mean single sequence MFE | -23.00 |
Consensus MFE | -13.30 |
Energy contribution | -12.88 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.42 |
Mean z-score | -2.30 |
Structure conservation index | 0.58 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952926 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10015430 95 + 22407834 UGUUUUUGCAUACGUAGGGUUUCUCUAAAAAUCUCGGGAAUUACUCCUUGAUCUGCUAGUUUUAGGGAUUUCUGCCCUUCGUGUUCGUGUUUUUU .......(.(((((.(((((.((((((((((((..((((.....)))).))).......))))))))).....))))).))))).)......... ( -23.91) >DroEre_CAF1 11507 95 + 1 GGCCUUGGAAUACGUGGAUUUUCCCUGUAAAUCUCUGGGAUUAAUCCUUGGUCUGCCAUUUUUGGCGAUUUCUCCUUUUCGUCUUUCACUUUUAU .....(((((.(((.(((((.((((...........))))..)))))..((((.((((....)))))))).........))).)))))....... ( -22.60) >DroYak_CAF1 11510 95 + 1 GGCUUUGGGAUACGUAGAUUUUCCCUAAAAAUCUCUGGGAUUCCUCUUUGGUCUGCUAUCUUUGGGGAAUUCUCCAUUUCGUGAUCCACUUUUAU .....((((.((((.(((((((.....)))))))..((((((((((..(((....))).....))))))))))......)))).))))....... ( -22.50) >consensus GGCUUUGGAAUACGUAGAUUUUCCCUAAAAAUCUCUGGGAUUACUCCUUGGUCUGCUAUUUUUGGGGAUUUCUCCAUUUCGUGUUCCACUUUUAU ......((((((((.(((...((((((((((((...(((.....)))..))).......)))))))))..)))......))))))))........ (-13.30 = -12.88 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:38 2006