Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,007,400 – 10,007,496 |
Length | 96 |
Max. P | 0.617835 |
Location | 10,007,400 – 10,007,496 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.54 |
Mean single sequence MFE | -23.13 |
Consensus MFE | -15.28 |
Energy contribution | -15.28 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -1.48 |
Structure conservation index | 0.66 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10007400 96 - 22407834 CUUAGCCAGCAGCAUGGGUGAUUUCAUUGAAGUCAAAUCGAAAAUGUCUAUGAUGUCGUUCAGAGAGAUCGAGAACCGAUCAGCUGCAAAA----GCAAU-- ....((..(((((.((..((((.((((.((..((.....)).....)).)))).))))..))....(((((.....))))).)))))....----))...-- ( -28.30) >DroVir_CAF1 1844 101 - 1 CUUUGCUAGGAGCAGCGGCGAUUUCAUAGAAGUUAAGUCGAAUAUGUCUAUGAUAUCGUUCAACGAAAUAGAAAAUCGAUCAGCUGCAAGAAAUUA-GACGC ...........(((((((((((.(((((((.(((......)))...))))))).))))))...(((.........)))....))))).........-..... ( -23.70) >DroPse_CAF1 2786 102 - 1 CUUAGCCAGCAGCAGUGGGGAUUUCAUUGAAGUCAAGUCGAAAAUGUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGCAAAUAAAUGUAAUGG ........(((((......((((((...))))))..((((......(((((....(((.....))).)))))....))))..)))))............... ( -21.00) >DroGri_CAF1 1628 101 - 1 UUUGGCCAGCAGCAUAGGUGAUUUCAUAGAAGUUAAAUCGAAUAUAUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGUAAGCAAAUC-ACUGG ....((..(((((.((..((((.(((((((.((..........)).))))))).))))..))......((......))....)))))..)).....-..... ( -21.40) >DroWil_CAF1 3265 93 - 1 CUUGGCCAGCAGCAGCGGUGAUUUCAUAGAUGUUAAAUCGAAUAUAUCUAUGAUAUCGUUGAGAGAAAUGGAAAAGCGAUCAGCUGUAAUU------AA--- .....(((.(..((((((((...((((((((((..........))))))))))))))))))...)...)))...(((.....)))......------..--- ( -23.40) >DroPer_CAF1 2729 102 - 1 CUUAGCCAGCAGCAGUGGGGAUUUCAUUGAAGUCAAGUCGAAAAUGUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGCAAAUAAAUGUAAUGG ........(((((......((((((...))))))..((((......(((((....(((.....))).)))))....))))..)))))............... ( -21.00) >consensus CUUAGCCAGCAGCAGCGGUGAUUUCAUAGAAGUCAAAUCGAAAAUGUCUAUGAUAUCGUUUAACGAAAUGGAAAAACGAUCAGCUGCAAAUAAAUG_AAUGG ........(((((......((((((...))))))..((((......(((((....(((.....))).)))))....))))..)))))............... (-15.28 = -15.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:36 2006