Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,000,206 – 10,000,315 |
Length | 109 |
Max. P | 0.682876 |
Location | 10,000,206 – 10,000,315 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.26 |
Mean single sequence MFE | -18.78 |
Consensus MFE | -11.58 |
Energy contribution | -12.62 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.74 |
Structure conservation index | 0.62 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10000206 109 - 22407834 UCAUCAGGAGCACACUUAACUACUUCGUUAUCCGUACCUUUAACCGAAAAUUGUACUAACCAGUCGAAUAAUCGAACAGUAGUAUUUUCAAUGGAUAAAAUGGAACAAA ......((((............))))....(((((...((((.(((......((((((.....((((....))))....))))))......))).)))))))))..... ( -17.50) >DroSec_CAF1 31375 109 - 1 UCAUCUGGAGCACACUUAACUCCUUCGUUAUCCGUACCUUUAACCGAAAAUAGUACUAACCAGUCGAAUAAUCGAACAGUACUAUUUUCAAUGGAUAAAAUGGAACAAA ...(((((((.........))))....((((((((.......)).((((((((((((......((((....))))..))))))))))))...))))))...)))..... ( -25.80) >DroSim_CAF1 34401 89 - 1 --------------------UCCUUCGUUAUCCGUACCUUUAACCGAAAAUAGUACUAACCAGUCGAAUAAUCGAACAGUACUAUUUUCAAUGGAUAAAAUGGAACAAA --------------------(((....((((((((.......)).((((((((((((......((((....))))..))))))))))))...))))))...)))..... ( -25.10) >DroEre_CAF1 32141 109 - 1 GCACCAAGAACUAAUUUUACGCCUCCAUCGCCCGCACCUUUAAAUGAAAAUAUUAGCAACCAAUCGAACAAUCGAGCAGUAUUUUUUUCAAUGGAUAAAAUGGAACAGA .......................(((((.(....).((.......(((((((((.((......((((....)))))))))))))))......)).....)))))..... ( -12.82) >DroYak_CAF1 32207 109 - 1 GCAUCAAGAACUCAUUUAACGCCUUCAUCAUCCGCACCUUUAAAAGAAAAUGUUACCAACCAAUCGGGAAAUCGAGCAGUAUCAUUUUCAAUGGAUAAAAUGGAACAGA ...........((((((...((...........))..........(((((((.(((.......((((....))))...))).)))))))........))))))...... ( -12.70) >consensus GCAUCAAGAACACACUUAACUCCUUCGUUAUCCGUACCUUUAACCGAAAAUAGUACUAACCAGUCGAAUAAUCGAACAGUACUAUUUUCAAUGGAUAAAAUGGAACAAA .......................((((((((((((..........(((((((.((((......((((....))))..)))).))))))).)))))))..)))))..... (-11.58 = -12.62 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:35 2006