Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,044,611 – 1,044,712 |
Length | 101 |
Max. P | 0.670408 |
Location | 1,044,611 – 1,044,712 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.35 |
Mean single sequence MFE | -26.18 |
Consensus MFE | -14.95 |
Energy contribution | -16.22 |
Covariance contribution | 1.27 |
Combinations/Pair | 1.12 |
Mean z-score | -1.48 |
Structure conservation index | 0.57 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1044611 101 + 22407834 ----ACCAACUCGAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGUGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA ----...........((((((------------...((.((.((((.---((((((((((((................)))))))))).))...)))).))))...))))))........ ( -28.29) >DroSec_CAF1 26756 101 + 1 ----ACCAACUCUAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA ----...........((((((------------...((.((.(((((---(.((((((((...((((..........)))).)))))))).)).)))).))))...))))))........ ( -26.70) >DroSim_CAF1 18559 101 + 1 ----ACCAACUCGAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCGGAGGUCAGGUUAUCGUGGGGCUAACAA ----...........((((((------------...((.((.((((.---(.((((((((...((((..........)))).)))))))).)..)))).))))...))))))........ ( -25.90) >DroEre_CAF1 23997 96 + 1 ----ACCAACCCGAACG-----------------CCACUCUAAUCUU---GCCACUUUUUCAGCCAUUUGUAAUCCCAUGGAGCAGAGUGCCUGAGGUCAGGUUAUCGUGAAGCUAACUA ----............(-----------------((((..((((((.---(((......((((.(((((....(((...)))...))))).))))))).))))))..)))..))...... ( -20.70) >DroYak_CAF1 26071 113 + 1 ----GCCAACCCGAACCCACACCCACGUCCACACCCACUUUAAUCUU---GCCACUUUUUCAGCCAUUUGUAAUCCCAUGGAGGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA ----.............................(((((..((((((.---(((......((((.(((((....(((...)))...))))).))))))).))))))..)))))........ ( -27.80) >DroAna_CAF1 32857 92 + 1 AGCCGCCCACUUUUUCUCGCC------------CCC-----AACCUGGGCGCCAGCCCUUCAUUCAUUAUAAUUCGCACUGACGA--AUGGGUGAAGUCAG---------GGCCUAACCC .(.((((((............------------...-----....)))))).).(((((...((((((...(((((......)))--)).))))))...))---------)))....... ( -27.71) >consensus ____ACCAACUCGAACCCACG____________CCCACUCUAAUCUA___GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA .................................(((((..((((((....(((......((((.(((((....(((...)))...))))).))))))).))))))..)))))........ (-14.95 = -16.22 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:31 2006