Locus 344

Sequence ID 2L_DroMel_CAF1
Location 1,044,611 – 1,044,712
Length 101
Max. P 0.670408
window545

overview

Window 5

Location 1,044,611 – 1,044,712
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.35
Mean single sequence MFE -26.18
Consensus MFE -14.95
Energy contribution -16.22
Covariance contribution 1.27
Combinations/Pair 1.12
Mean z-score -1.48
Structure conservation index 0.57
SVM decision value 0.29
SVM RNA-class probability 0.670408
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1044611 101 + 22407834
----ACCAACUCGAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGUGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA
----...........((((((------------...((.((.((((.---((((((((((((................)))))))))).))...)))).))))...))))))........ ( -28.29)
>DroSec_CAF1 26756 101 + 1
----ACCAACUCUAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA
----...........((((((------------...((.((.(((((---(.((((((((...((((..........)))).)))))))).)).)))).))))...))))))........ ( -26.70)
>DroSim_CAF1 18559 101 + 1
----ACCAACUCGAACCCACG------------CCCACUCUAAUCUA---GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCGGAGGUCAGGUUAUCGUGGGGCUAACAA
----...........((((((------------...((.((.((((.---(.((((((((...((((..........)))).)))))))).)..)))).))))...))))))........ ( -25.90)
>DroEre_CAF1 23997 96 + 1
----ACCAACCCGAACG-----------------CCACUCUAAUCUU---GCCACUUUUUCAGCCAUUUGUAAUCCCAUGGAGCAGAGUGCCUGAGGUCAGGUUAUCGUGAAGCUAACUA
----............(-----------------((((..((((((.---(((......((((.(((((....(((...)))...))))).))))))).))))))..)))..))...... ( -20.70)
>DroYak_CAF1 26071 113 + 1
----GCCAACCCGAACCCACACCCACGUCCACACCCACUUUAAUCUU---GCCACUUUUUCAGCCAUUUGUAAUCCCAUGGAGGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA
----.............................(((((..((((((.---(((......((((.(((((....(((...)))...))))).))))))).))))))..)))))........ ( -27.80)
>DroAna_CAF1 32857 92 + 1
AGCCGCCCACUUUUUCUCGCC------------CCC-----AACCUGGGCGCCAGCCCUUCAUUCAUUAUAAUUCGCACUGACGA--AUGGGUGAAGUCAG---------GGCCUAACCC
.(.((((((............------------...-----....)))))).).(((((...((((((...(((((......)))--)).))))))...))---------)))....... ( -27.71)
>consensus
____ACCAACUCGAACCCACG____________CCCACUCUAAUCUA___GCCACUUUUUCAGCCAUUUAUAAUCCCAUGGAAGAGAGUGCCUGAGGUCAGGUUAUCGUGGGGCUAACAA
.................................(((((..((((((....(((......((((.(((((....(((...)))...))))).))))))).))))))..)))))........ (-14.95 = -16.22 +   1.27) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:31 2006