| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,987,262 – 9,987,358 |
| Length | 96 |
| Max. P | 0.882099 |
| Location | 9,987,262 – 9,987,358 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 71.48 |
| Mean single sequence MFE | -14.82 |
| Consensus MFE | -10.61 |
| Energy contribution | -11.00 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9987262 96 - 22407834 ----CCCAACUACAUUACUUUGGUCUUUGGU-CUGUUUUCAUUCUCUUUUUCUUUUUUUAC---UUGUAAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUG ----.((((...((......))....)))).-.............................---((((...(((((((((.....)))))))))...))))... ( -12.50) >DroSec_CAF1 18639 94 - 1 ----CCCAACUACAUUACCCUGGUCUUUGGU-CUGUUUUCCUUCUUUUCUUUU--UUUUAC---UUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUG ----.((((..((.........))..)))).-.....................--......---(((((..(((((((((.....)))))))))..)))))... ( -15.60) >DroSim_CAF1 21472 96 - 1 ----CCCAACUACAUUACUCUGGUCUUUGGU-CUGUUUUCCUUCUUUUCUUUUUUUUUUAC---UUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUG ----.((((..((.........))..)))).-.............................---(((((..(((((((((.....)))))))))..)))))... ( -15.60) >DroEre_CAF1 19168 88 - 1 CCUCCCCAACUGUAUUACUUUGGUCAUACUC-UGGAU------------UUUCUUUUUUAC---UUUCGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUG .....(((...((((.((....)).))))..-)))..------------............---(((((..(((((((((.....)))))))))..)).))).. ( -14.90) >DroYak_CAF1 19205 86 - 1 CCUUCCAAACUGCAUUAUUCUGGUCUUAGUC-CGGAU------------UUU--UUUUUAC---UUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUG ..................(((((.......)-)))).------------...--.......---(((((..(((((((((.....)))))))))..)))))... ( -18.50) >DroPer_CAF1 17626 93 - 1 ----UCCUCCUGCCUCCCC------CUCCGCCCAGAUAUUUCUCCCGUUUU-GUGGUUUACUUUUUGUGGAGCCGUUUAAUUGCCUCGAAUGUCAACGCAAAUG ----...............------....((...(((((((...(.(((..-(((((((((.....)).)))))))..))).)....)))))))...))..... ( -11.80) >consensus ____CCCAACUACAUUACUCUGGUCUUUGGC_CUGAUUUC_UUCU_UU_UUUUUUUUUUAC___UUGUGAAGACAUUUAAUUGCCUUGAAUGUCAACGCAAAUG ................................................................(((((..(((((((((.....)))))))))..)))))... (-10.61 = -11.00 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:29 2006