Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,986,331 – 9,986,429 |
Length | 98 |
Max. P | 0.665429 |
Location | 9,986,331 – 9,986,429 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.79 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -17.18 |
Energy contribution | -17.30 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.18 |
Mean z-score | -1.51 |
Structure conservation index | 0.79 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9986331 98 + 22407834 CAACUGAAUUCGGCAGCAUUGCAGCUGCUCAUCAGAACGCUUCCCCUAGAGCUCCCCCAUCCGCUCCAGAACCCACUCGCAGUCCCU---------CCAGCUCCUCC ...((((....((((((......))))))..))))...(((....((.((((..........)))).)).....((.....))....---------..)))...... ( -18.70) >DroSec_CAF1 17650 107 + 1 CAACUGGAUUCGGCGGCAUUGCAGCUGCUCAUCAGACCGCUUCCCCUAGAGCUCCCCCAUUCGCUCCAGAACCCACUCCCAGUCCCUUCAAACCCUCCAGCUCCUCC ...(((((...((((((......)))))).....(((.((((......)))).......(((......)))..........)))...........)))))....... ( -20.30) >DroSim_CAF1 20492 107 + 1 CAACUGGAUUCGGCGGCAUUGCAGCUGCUCAUCAGACCGCUUCCCCUAGAGCUCCCCCAUUCGCUACAGAGCCCACUCCCAGUCCCUCCAAUCCCUCUAGCUCCUCC ...((((....((((((......))))))..))))..........((((((...........(((...(((....)))..)))...........))))))....... ( -19.65) >DroEre_CAF1 18132 101 + 1 CAACUGGAUUCGGCGGCAUUGCAGCUGUUCAUCAGUCCGCUUC-CCUAGAGCUCCCCCAUCCGCUCCAGAACCCACUCCAAAUCCCUCCAAUCCCUCCAGCG----- ...(((((...(((((.......((((.....)))))))))..-.((.((((..........)))).))..........................)))))..----- ( -20.21) >DroYak_CAF1 18262 104 + 1 CAACUGGAUUCGGCGGCAUUGCAGCUGCUCAUCAGAGCGCUUCCCCUAGAGCUCCCCCAUCCGCUCCAGAACUCACUCCAAAUGCCUCCAAUCCCUCCAGCUC---C .....(((((.((.((((((..(((.((((....)))))))....((.((((..........)))).))...........)))))).))))))).........---. ( -29.80) >consensus CAACUGGAUUCGGCGGCAUUGCAGCUGCUCAUCAGACCGCUUCCCCUAGAGCUCCCCCAUCCGCUCCAGAACCCACUCCCAGUCCCUCCAAUCCCUCCAGCUCCUCC ...(((((...((((((......))))))................((.((((..........)))).))..........................)))))....... (-17.18 = -17.30 + 0.12)
Location | 9,986,331 – 9,986,429 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 86.79 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -25.58 |
Energy contribution | -27.54 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.10 |
Mean z-score | -1.87 |
Structure conservation index | 0.71 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9986331 98 - 22407834 GGAGGAGCUGG---------AGGGACUGCGAGUGGGUUCUGGAGCGGAUGGGGGAGCUCUAGGGGAAGCGUUCUGAUGAGCAGCUGCAAUGCUGCCGAAUUCAGUUG .....((((((---------((((((.((.......(((((((((..........)))))))))...)))))))..((.(((((......)))))))..))))))). ( -32.10) >DroSec_CAF1 17650 107 - 1 GGAGGAGCUGGAGGGUUUGAAGGGACUGGGAGUGGGUUCUGGAGCGAAUGGGGGAGCUCUAGGGGAAGCGGUCUGAUGAGCAGCUGCAAUGCCGCCGAAUCCAGUUG .....(((((((.((((......))))..(.((((.(((((((((..........)))))))))...((((.(((.....)))))))....)))))...))))))). ( -35.90) >DroSim_CAF1 20492 107 - 1 GGAGGAGCUAGAGGGAUUGGAGGGACUGGGAGUGGGCUCUGUAGCGAAUGGGGGAGCUCUAGGGGAAGCGGUCUGAUGAGCAGCUGCAAUGCCGCCGAAUCCAGUUG .......................(((((((...(((((((.(........).)))))))..((((..((((.(((.....)))))))....)).))...))))))). ( -31.80) >DroEre_CAF1 18132 101 - 1 -----CGCUGGAGGGAUUGGAGGGAUUUGGAGUGGGUUCUGGAGCGGAUGGGGGAGCUCUAGG-GAAGCGGACUGAUGAACAGCUGCAAUGCCGCCGAAUCCAGUUG -----.((((((....((((.((.(((.........(((((((((..........))))))))-)..((((.(((.....)))))))))).)).)))).)))))).. ( -35.80) >DroYak_CAF1 18262 104 - 1 G---GAGCUGGAGGGAUUGGAGGCAUUUGGAGUGAGUUCUGGAGCGGAUGGGGGAGCUCUAGGGGAAGCGCUCUGAUGAGCAGCUGCAAUGCCGCCGAAUCCAGUUG .---.(((((((....((((.((((((.(.(((...(((((((((..........))))))))).....((((....)))).))).))))))).)))).))))))). ( -44.30) >consensus GGAGGAGCUGGAGGGAUUGGAGGGACUGGGAGUGGGUUCUGGAGCGGAUGGGGGAGCUCUAGGGGAAGCGGUCUGAUGAGCAGCUGCAAUGCCGCCGAAUCCAGUUG .....(((((((....((((.((.............(((((((((..........)))))))))...((((.(((.....)))))))....)).)))).))))))). (-25.58 = -27.54 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:28 2006