Locus 3433

Sequence ID 2L_DroMel_CAF1
Location 9,970,492 – 9,970,584
Length 92
Max. P 0.521976
window5437

overview

Window 7

Location 9,970,492 – 9,970,584
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 76.69
Mean single sequence MFE -22.12
Consensus MFE -3.48
Energy contribution -4.72
Covariance contribution 1.24
Combinations/Pair 1.06
Mean z-score -1.51
Structure conservation index 0.16
SVM decision value -0.02
SVM RNA-class probability 0.521976
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9970492 92 - 22407834
UUUUAUGGUGCAGACAGG-ACCUC--GG-GCAUAGGUACAUACAUAUAUAUAUAUAUACAGAUGUGAAUAUGCUCAUAUGCAGCGCAAGGACACUU
((((.((.((((((....-...))--((-(((((..(((((...(((((....)))))...)))))..)))))))...)))).)).))))...... ( -22.20)
>DroSec_CAF1 8804 84 - 1
UUUUAUGGUGCAGACAGG-ACCUC--GG-GCAUAGGU--------AUAUAUGUACAUACAGAUGUGAAUAUGCUCAUAUGCAGCGCAAGGACACUU
((((.((.((((((....-...))--((-(((((..(--------((((.(((....))).)))))..)))))))...)))).)).))))...... ( -20.40)
>DroSim_CAF1 11011 84 - 1
UUUUAUGGUGCAGACAGG-ACCUC--GG-GCAUAGGU--------AUAUAUGUACAUACAGAUGUGAAUAUGCUCAUAUGCAGCGCAAGGACACUU
((((.((.((((((....-...))--((-(((((..(--------((((.(((....))).)))))..)))))))...)))).)).))))...... ( -20.40)
>DroEre_CAF1 9517 80 - 1
UUUUAUGGUGCAGACAGG-ACCUC--GG-GCAUAGGU--------AUACU----CGUACAGAUGUGAAUAUGCUCAUAUCCACACCAAGGACACUU
.....(((((......((-(....--((-(((((..(--------(((.(----(.....))))))..)))))))...))).)))))......... ( -18.80)
>DroPer_CAF1 8983 83 - 1
UU-UAUGGUGCACAUGUGUACUUCUACGUGUGUGUGU--------GCAUAUGUAUGUACAUCUG----UAUGUUUUGAUCCAGAGCAAGGGCACUC
..-...((((((((.((((((...(((((((((....--------))))))))).)))))).))----).(((((((...)))))))...))))). ( -28.80)
>consensus
UUUUAUGGUGCAGACAGG_ACCUC__GG_GCAUAGGU________AUAUAUGUACAUACAGAUGUGAAUAUGCUCAUAUGCAGCGCAAGGACACUU
......(((((........((((..........)))).........................((((....(((......))).))))..).)))). ( -3.48 =  -4.72 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:26 2006