Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,969,825 – 9,969,923 |
Length | 98 |
Max. P | 0.564916 |
Location | 9,969,825 – 9,969,923 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.21 |
Mean single sequence MFE | -45.72 |
Consensus MFE | -29.48 |
Energy contribution | -30.28 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.64 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9969825 98 + 22407834 CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGAUGCUCCUGUCUCGCAUCCG-------GGGGGCAGUGGCUCGGCACAAGCGUUAAACA .(((((.((((((.(((...))).)))((((((((((((...(((((((((.........)))))))-------))))))))))))))..))).)))))...... ( -45.10) >DroSec_CAF1 8083 104 + 1 CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGGUGCUCCUGGCUCGCAUCCGUGGGGAAG-GGGCAGUGGCUCGGCUCAAGCGGCAAACA ..((((((((.(....).))))(((.(((((((((((((.(((((((((((.........))))))).))))...-))))))))))))).)))....)))).... ( -48.60) >DroSim_CAF1 10261 105 + 1 CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGGUGCUCCUGGCUCGCAUCCGUGGUGAGGGGGGCAGUGGCUCGGCUCAAGCGGCAAACA ..((((((((.(....).))))(((.(((((((((((((.(((((((((((.........)))))))....)))).))))))))))))).)))....)))).... ( -49.80) >DroEre_CAF1 8819 92 + 1 CAUGCUGGUGGCUAUGGCUACCGGGGUGGGUUACUGGCUGCUUCCGGGUGCUCCUGGCUCAGAUUCG-------G-GGGCAGUGGCU-----CAGGCGGCACACA (((.((((((((....)))))))).)))........(((((((.(.(.(((((((((.......)))-------)-))))).).)..-----.)))))))..... ( -41.90) >DroYak_CAF1 8847 92 + 1 CAUGCUGGUGGCCAUGGCUACCGGGGUGGGUUACUGGCUGCUUCCGGGUGCUUCUGGCUGAGAUUCG-------G-GGGCAGUGGCU-----CAUGCGGCAAACA ..((((((((((....)))))).(.(((((((....(((((((((((((.(((......))))))))-------)-)))))))))))-----))).))))).... ( -43.20) >consensus CAUGCUGGUGACUAUGGCUACCGGGGUGGGUUACUGCCUGCUUCCGGGUGCUCCUGGCUCGCAUCCG_______G_GGGCAGUGGCUCGGC_CAAGCGGCAAACA (((.((((((.(....).)))))).)))(((((((((((.(...(((((((.........))))))).......).))))))))))).................. (-29.48 = -30.28 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:25 2006