| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,961,272 – 9,961,392 |
| Length | 120 |
| Max. P | 0.933369 |
| Location | 9,961,272 – 9,961,392 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.47 |
| Mean single sequence MFE | -42.03 |
| Consensus MFE | -22.74 |
| Energy contribution | -25.97 |
| Covariance contribution | 3.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9961272 120 + 22407834 CGUCCACGCCAUCUUCGUCCUCGAAAGCGUCGUCAAUGUGCGGGUGCUGAUGUUGCUGGUAGUGAUAUUGUUGGUAGCGGUGUCACCUGCCUGCGCCCGCACCCAACAGCAGGGCAUAAU .((((((((....((((....)))).)))).......((((((((((..........((((((((((((((.....))))))))).))))).)))))))))).........))))..... ( -47.70) >DroSec_CAF1 6696 111 + 1 CGUCCACGCCAUCUUCGUCCUCGAAAGCGUCGUCAAUGUGCGGGUGC---------UGGUAGUGAUAUUGUUGGUAGCGGUGUCACCUGCCUGCGCCCGCACCCAACAGCAGGGCAUAAU .((((((((....((((....)))).)))).......((((((((((---------.((((((((((((((.....))))))))).))))).)))))))))).........))))..... ( -51.50) >DroWil_CAF1 2186 111 + 1 UCUCUACAUCUACAACAUCCUCGAAAGCAUCAUCAAU---CGUGUGCUGAUGU---UGAUUAUGAUAA---UGGUAACGUUGUCAUCUACCCGCUCCAGCACCCAAUAGCAGAGCAUAGU ............(((((((......((((.(((....---.))))))))))))---))...(((((((---((....)))))))))......((((..((........)).))))..... ( -26.90) >consensus CGUCCACGCCAUCUUCGUCCUCGAAAGCGUCGUCAAUGUGCGGGUGCUGAUGU___UGGUAGUGAUAUUGUUGGUAGCGGUGUCACCUGCCUGCGCCCGCACCCAACAGCAGGGCAUAAU ................((((((....)..........((((((((((..........((((((((((((((.....)))))))))).)))).))))))))))........)))))..... (-22.74 = -25.97 + 3.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:23 2006