Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,041,080 – 1,041,184 |
Length | 104 |
Max. P | 0.596856 |
Location | 1,041,080 – 1,041,184 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.75 |
Mean single sequence MFE | -26.35 |
Consensus MFE | -15.82 |
Energy contribution | -16.32 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.22 |
Mean z-score | -1.93 |
Structure conservation index | 0.60 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1041080 104 - 22407834 GCAAUUGAACAGUUGAUACAGUCAGAUACACUAGAACUGGAAAUGAAUUCCAUUUCCUAUCAUUUAACUAAUCUGAUGUAUAAACGU----------UUUGAGUUUUUGGCUCA ......((((.(((.(((((.((((((....((((...(((((((.....))))))).....))))....))))))))))).)))))----------))(((((.....))))) ( -24.90) >DroSec_CAF1 23337 114 - 1 GCAAUUGAACAGUUGAUACAGGCAGAUACACUAGAAUUGGAAAUGAAUUCCAUUUCCCAUCACUUGACCAAUCUGAUGUAUAAACGCUUCAAGCCAUUCUGAGUUUUUGGCGCA ((..(((((..(((.(((((..(((((...........(((((((.....)))))))((.....))....))))).))))).)))..)))))((((...........)))))). ( -29.80) >DroSim_CAF1 15099 114 - 1 GCAAUAGAACAGUUGAUACAGUCAGAUACAGUAGAAUUGGAAAUGAAUUCCAUUUCCCAUCAUUUGACCAAUCUGAUGUAUAAACGCUUCAAGCCAUUCUGAGUUUUUGGCGCA ((....(((..(((.(((((.((((((...((.((((.(((((((.....)))))))....)))).))..))))))))))).)))..)))..((((...........)))))). ( -30.10) >DroYak_CAF1 22591 114 - 1 ACAAUUGAACAGUUGAUACAGUCGGAAGCAACAGAAUUGGGAAUAAAUUCCAUUUCUAAUCAUUUGCCUAAUCUAAUGACCAAUCGUUUUGAGCCAUUCUGAGUAUUUGGCGCA .(((((....))))).....((((((.((...((((.(((((.....))))).))))..(((..((.((.....(((((....)))))...)).))...))))).))))))... ( -20.60) >consensus GCAAUUGAACAGUUGAUACAGUCAGAUACACUAGAAUUGGAAAUGAAUUCCAUUUCCCAUCAUUUGACCAAUCUGAUGUAUAAACGCUUCAAGCCAUUCUGAGUUUUUGGCGCA .(((((....))))).....((((((.((..((((((.(((((((.....)))))))(((((..(.....)..))))).................)))))).)).))))))... (-15.82 = -16.32 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:30 2006