Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,950,570 – 9,950,665 |
Length | 95 |
Max. P | 0.901219 |
Location | 9,950,570 – 9,950,665 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 86.59 |
Mean single sequence MFE | -34.43 |
Consensus MFE | -31.09 |
Energy contribution | -31.07 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.27 |
Mean z-score | -1.83 |
Structure conservation index | 0.90 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9950570 95 - 22407834 ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUUCAGUGACCAAGUGCUGAUUC .....((((((((((((((.((((((((((..(((((....))))))))))))))).......((....))...)))))).)).))).))).... ( -38.60) >DroSec_CAF1 15221 95 - 1 ACCUAUAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAAUGACCAAGUGUUGAUUC .......(((((..(((...((((((((((..(((((....)))))))))))))))..)))..)))))..((((.....))))............ ( -32.90) >DroSim_CAF1 15674 95 - 1 ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCGGGAAAAGUUGCGGUCCCGGUUCCAGUGACCAAGUGCUGAUUC .....(((((((((((((..((((((((((..(((((....))))))))))))))).......((....))....))))).)).))).))).... ( -36.70) >DroEre_CAF1 15948 94 - 1 ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAGUGG-CACUCGCUGUUUC .......((((((.((((((((((((((((..(((((....))))))))))))))...)))..)))).)))))).(((((.-....))))).... ( -36.20) >DroYak_CAF1 15519 94 - 1 ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAGUGC-CACACGCAGUUCC ..........((((((((..((((((((((..(((((....))))))))))))))).......((....))....))))))-))........... ( -36.40) >DroAna_CAF1 15384 88 - 1 ACCUACAAGCUGUC-CCGAGUUUUGGCCAUCAGUUCGAGUCCGAGCGUGGUCAGGAAAAGUUGCGGUUACGGU---AAUACCCAAA---AUAUUU (((....((((((.-.(...((((((((((..(((((....)))))))))))))))...)..))))))..)))---..........---...... ( -25.80) >consensus ACCUACAGACUGGCGCUGACUUCUGGCCAUCAGUUCGAAUCCGAGCGUGGCCAGGAAAAGUUGCGGUCCCGGUUCCAGUGACCAAGUGCUGAUUC .......((((((.((((..((((((((((..(((((....))))))))))))))).......)))).)))))).(((((......))))).... (-31.09 = -31.07 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:20 2006