| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,950,344 – 9,950,528 |
| Length | 184 |
| Max. P | 0.985158 |
| Location | 9,950,344 – 9,950,457 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.46 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -16.45 |
| Energy contribution | -17.07 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.842008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9950344 113 - 22407834 GUUGAGCAAAAUUUCAGGUGUGUGAGAAAUGUGUUUAGCAUUCAUCGGAGAAUUUUCCAGUUUGGUAAAGUGAAUCGGCUUAAAUGGAGAUCAUUUUCUGGUAAAUAUUUAGG ((((((((...(((((......)))))....))))))))(((.((((((((((((((((....(((...(.....).)))....))))))..)))))))))).)))....... ( -27.30) >DroSec_CAF1 15010 90 - 1 GUUGAGCAAAAUUUCAGGUGUGUGAGAAAUGUGUUUAGCAUUCAUCGGAGGAUUUAUCAGACUGGU----------------------GAUCAUU-UCCGGUGAGUAUUCAGG ((((((((...(((((......)))))....))))))))((((((((((((..(((((.....)))----------------------))...))-))))))))))....... ( -28.00) >DroSim_CAF1 15441 112 - 1 GUUGAGCAAAAUUUCAGGUGUGUGAGAAAUGUGUUUAGCAUUCAUCGGAGGAUUUUCCAGUCUGGUAAAGUGAUGGGGCUUGAAUGGAGAUCAUU-UCCGGUGAGUAUUUAGG ((((((((...(((((......)))))....))))))))((((((((((((..((((((.((.(((..(....)...))).)).))))))...))-))))))))))....... ( -36.00) >DroEre_CAF1 15717 113 - 1 GUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUUUAGCAUUCAUCGGACGAUUUUCAAGUCUGGUACCGCGAUGCGUCUUAAGGGGAGGUCAUUUUCUGGUGAGUAUUCAGG ((((((((((.(((((......)))))..))))))))))((((((((((.(((((((......((...(((...))).)).....)))))))....))))))))))....... ( -29.10) >DroYak_CAF1 15288 113 - 1 GUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUUUAGCAUUCAUCGGAGGAUUUGCAAAGUUGGUAAAGCAAUGCGGCUUGGGUGGAGAUCCUUAUCUGGUGAGUAUUCAGG ((((((((((.(((((......)))))..))))))))))((((((((((((((((.((.....(((...((...)).)))....)).))))))...))))))))))....... ( -33.90) >DroPer_CAF1 14095 104 - 1 GUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUUAAGCAAUCUUCACUCCAUCA-GCAGUCGG-------AAUCGGGAUUGAAACUCUGUCUUU-GGCGGUGAGUCAUUAGG (((.((((((.(((((......)))))..)))))).)))....(((((((((.((-((((((..-------......))))).....)))....)-)).))))))........ ( -20.20) >consensus GUUGAGCAAAAUUUCAGGUGUGUGAGAAAUGUGUUUAGCAUUCAUCGGAGGAUUUUCCAGUCUGGUAAAG_GAUGCGGCUUGAAUGGAGAUCAUU_UCCGGUGAGUAUUCAGG ((((((((...(((((......)))))....))))))))((((((((((.(((((................................)))))....))))))))))....... (-16.45 = -17.07 + 0.62)
| Location | 9,950,417 – 9,950,528 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.00 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -25.69 |
| Energy contribution | -25.74 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.844932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9950417 111 + 22407834 UGCUAAACACAUUUCUCACACACCUGAAAUUUUGCUCAACCGG-AU-CGUUGGCCAUAA-UGGCAGCGGUUCAGCAAGAUACAGGCGCGAAUGAAAUGUGUUGCC--AAAG-G---ACUU .((..((((((((((...(.(.((((..((((((((.....((-((-(((((.((....-.))))))))))))))))))).)))).).)...)))))))))))).--....-.---.... ( -38.90) >DroVir_CAF1 18659 112 + 1 ACCGCUACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGG-AUUUAGAUGUCUCAA-UUGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAUAUGCCGGC--CAAGGG---AU-A .(((((.((.(((((...(.(.((((..((((((((.(((((.-.....(((......)-))....))))).)))))))).)))).).)...))))).))..)))--...)).---..-. ( -29.40) >DroGri_CAF1 16938 111 + 1 GCCGCUACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGG-AUUUGGAUGUCACAA-UGGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAUAUGCCGGU--CAAG-G---AU-A ((((...((.(((((...(.(.((((..((((((((.(((((.-..(((.......)))-......))))).)))))))).)))).).)...))))).)).))))--....-.---..-. ( -29.90) >DroWil_CAF1 25822 117 + 1 ACCGUCACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGGAAA-UGAUGAUCACAAUUGGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAUAUGCCGGCC-AAAU-GUUAAUUU .(((...((.(((((...(.(.((((..((((((((.(((((....-((((.......))))....))))).)))))))).)))).).)...))))).)).)))..-....-........ ( -28.80) >DroMoj_CAF1 20129 111 + 1 ACCGCUACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGG-AUUUGGAUGUGACAA-UUGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAGAUGCCGGC--UAAG-G---AU-A .(((((.((..((((...(.(.((((..((((((((.(((((.-..(((.......)))-......))))).)))))))).)))).).)...))))..))..)))--...)-)---..-. ( -28.60) >DroAna_CAF1 15238 113 + 1 UGCUUAACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGG-AU-UCUGUGCCAUAU-CGGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAUAUGCCGCUUGAAAG-G---AUUC .......((.(((((...(.(.((((..((((((((.(((((.-..-....((((....-.)))).))))).)))))))).)))).).)...))))).))((........)-)---.... ( -29.10) >consensus ACCGCUACAAAUUUCUCACACACCUGAAAUUUUGCUCAACCGG_AU_UGGAUGUCACAA_UGGUAACGGUUCAGCAAGAUACAGGCGCGAAUGAAAUAUGCCGGC__AAAG_G___AU_A .(((...((.(((((...(.(.((((..((((((((.(((((........................))))).)))))))).)))).).)...))))).)).)))................ (-25.69 = -25.74 + 0.06)
| Location | 9,950,417 – 9,950,528 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.00 |
| Mean single sequence MFE | -37.00 |
| Consensus MFE | -33.41 |
| Energy contribution | -33.33 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.90 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9950417 111 - 22407834 AAGU---C-CUUU--GGCAACACAUUUCAUUCGCGCCUGUAUCUUGCUGAACCGCUGCCA-UUAUGGCCAACG-AU-CCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUGUGUUUAGCA ....---.-....--.((((((((((((...((((((((.((.(((((.(((((..(((.-....))).....-..-.))))).))))).))..))))))))...))))))))))..)). ( -43.10) >DroVir_CAF1 18659 112 - 1 U-AU---CCCUUG--GCCGGCAUAUUUCAUUCGCGCCUGUAUCUUGCUGAACCGUUACAA-UUGAGACAUCUAAAU-CCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUAGCGGU .-..---......--(((((((.(((((...((((((((.((.(((((.(((((......-..((....)).....-.))))).))))).))..))))))))...))))).)))..)))) ( -37.04) >DroGri_CAF1 16938 111 - 1 U-AU---C-CUUG--ACCGGCAUAUUUCAUUCGCGCCUGUAUCUUGCUGAACCGUUACCA-UUGUGACAUCCAAAU-CCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUAGCGGC .-..---.-....--.((((((.(((((...((((((((.((.(((((.(((((((((..-..)))))........-..)))).))))).))..))))))))...))))).)))..))). ( -35.40) >DroWil_CAF1 25822 117 - 1 AAAUUAAC-AUUU-GGCCGGCAUAUUUCAUUCGCGCCUGUAUCUUGCUGAACCGUUACCAAUUGUGAUCAUCA-UUUCCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUGACGGU ........-....-.(((((((.(((((...((((((((.((.(((((.(((((..(......(((.....))-))..))))).))))).))..))))))))...))))).)))..)))) ( -36.90) >DroMoj_CAF1 20129 111 - 1 U-AU---C-CUUA--GCCGGCAUCUUUCAUUCGCGCCUGUAUCUUGCUGAACCGUUACAA-UUGUCACAUCCAAAU-CCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUAGCGGU .-..---.-....--(((((((..((((...((((((((.((.(((((.(((((......-...............-.))))).))))).))..))))))))...))))..)))..)))) ( -34.85) >DroAna_CAF1 15238 113 - 1 GAAU---C-CUUUCAAGCGGCAUAUUUCAUUCGCGCCUGUAUCUUGCUGAACCGUUACCG-AUAUGGCACAGA-AU-CCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUUAAGCA (((.---.-..)))..((.(((.(((((...((((((((.((.(((((.(((((......-............-..-.))))).))))).))..))))))))...))))).)))...)). ( -34.70) >consensus U_AU___C_CUUU__GCCGGCAUAUUUCAUUCGCGCCUGUAUCUUGCUGAACCGUUACCA_UUGUGACAUCCA_AU_CCGGUUGAGCAAAAUUUCAGGUGUGUGAGAAAUUUGUAGCGGU ................((((((.(((((...((((((((.((.(((((.(((((........................))))).))))).))..))))))))...))))).)))..))). (-33.41 = -33.33 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:19 2006