Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,937,546 – 9,937,650 |
Length | 104 |
Max. P | 0.755030 |
Location | 9,937,546 – 9,937,650 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -26.09 |
Consensus MFE | -21.73 |
Energy contribution | -21.96 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.14 |
Mean z-score | -1.60 |
Structure conservation index | 0.83 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9937546 104 - 22407834 GAUAGUGUCCAUAGUCUGUCAUCUUGAGCACUCCAUGGGUACGCAUUCCAUACACGCAUUUUUCCGGGAUGGACACUCAUGCUGCGCUUAUGAUACAACUGUUU ..........(((((.(((.(((.(((((.(..(((((((...((((((................))))))...)))))))..).))))).))))))))))).. ( -27.99) >DroSec_CAF1 2269 104 - 1 GAUAGUGUCUAUAGUGUGUCAUCUUGAGCACUCCAUGAGUACGCAUUCCAUACAUAAAAUUUUCCGGGAUUAACACUCAUGCUGCGCUUAUGAUACAACUGUUU ..........((((((((((((...((((.(..(((((((....(((((................)))))....)))))))..).))))))))))).))))).. ( -27.69) >DroEre_CAF1 2974 97 - 1 GA----AUUCAUAGUGUGCUAUCUUGAGCA-UCCAUAAGUACGCAUUCCAUACAGGCCUCUUUCCGGGAUAA--UCUCAUGCAGCGCUUAUGGUACAGCUGUUU ..----....((((((((((......))))-)(((((((..(((((........((.......))(((....--.))))))).)..)))))))....))))).. ( -22.60) >consensus GAUAGUGUCCAUAGUGUGUCAUCUUGAGCACUCCAUGAGUACGCAUUCCAUACACGCAUUUUUCCGGGAUAAACACUCAUGCUGCGCUUAUGAUACAACUGUUU ..........((((((((((((...((((.(..(((((((....(((((................)))))....)))))))..).))))))))))).))))).. (-21.73 = -21.96 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:14 2006