Locus 3422

Sequence ID 2L_DroMel_CAF1
Location 9,918,168 – 9,918,258
Length 90
Max. P 0.979550
window5421

overview

Window 1

Location 9,918,168 – 9,918,258
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 93.78
Mean single sequence MFE -34.00
Consensus MFE -29.60
Energy contribution -29.32
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.82
Structure conservation index 0.87
SVM decision value 1.84
SVM RNA-class probability 0.979550
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9918168 90 + 22407834
GACGUGUAAACGUCAAAAACCAGGGCUGCAGGCUGGAGUGCGGCUGUCAGUGGCUGUCGAUUGGCGAUGACAGCGCUGUCGUCUAUCGAU
(((((....))))).........(((..(.(((((.....)))))....)..)))((((((....(((((((....))))))).)))))) ( -32.70)
>DroSec_CAF1 14517 90 + 1
GACGUGUAAACGUCAAGAACCAGGGCUGGAGGCUGCAGUGCGGCUGUCAGUGGCUGUCGAUUGGCGAUGACAGCGCUGUCGCCUAUCGAU
(((((....)))))......(((.((((..((((((...))))))..))))..)))(((((.((((((.........)))))).))))). ( -36.80)
>DroSim_CAF1 14556 90 + 1
GACGUGUAAACGUCAAGAACCAGGGCUGGAGGCUGCAGUGCGGCUGUCAGUGGCUGUCGAUUGGCGAUGACAGCGCUGUCGCCUAUCGAU
(((((....)))))......(((.((((..((((((...))))))..))))..)))(((((.((((((.........)))))).))))). ( -36.80)
>DroEre_CAF1 14389 89 + 1
GACGUGUAAACGUCAAAAACCAGGGUUGCAAGCUGCAGUGCGGCUGUCAGUGGCAGUCGAUUAGCGAUGACAGCGCUGU-GUCUAUCGAU
(((((....)))))....(((((.((((((.((((.....(((((((.....)))))))..))))..)).)))).))).-))........ ( -31.70)
>DroYak_CAF1 14570 90 + 1
GACGUGUAAACGUCAAAAACCAGGGUUGCAAGCUGCAGUGCGGCUGUCAGUGACAGUCGAUUGGUGAUGACAGCGCUGUCGCCUAUCGAU
(((((....)))))..........((..(.((((((...))))))....)..)).((((((.((((((.........)))))).)))))) ( -32.00)
>consensus
GACGUGUAAACGUCAAAAACCAGGGCUGCAGGCUGCAGUGCGGCUGUCAGUGGCUGUCGAUUGGCGAUGACAGCGCUGUCGCCUAUCGAU
(((((....)))))..........((((..((((((...))))))..))))....((((((.((((((.........)))))).)))))) (-29.60 = -29.32 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:11 2006