| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,039,240 – 1,039,330 |
| Length | 90 |
| Max. P | 0.730046 |
| Location | 1,039,240 – 1,039,330 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.88 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1039240 90 + 22407834 -------------CAAAAGCCACUUAAUGACUAGCUCCGGCUCUAAC-------UGAACUUUUUUUAAUUUUCAGCUGUCGUCAGCAGCCGUAAAAAAGGCUUUAGUUUU- -------------..((((((.((........))...(((((.....-------((((..((....))..))))((((....))))))))).......))))))......- ( -19.90) >DroVir_CAF1 27084 95 + 1 --------------CAAAGCCACUUAAUAAAUGGCG--GGCUCUAACUUUCGGCUUAAUUUCAUUCAAUUUGCAGCUGUCGCCAGCAGCCGUAAAGUGGUCUUUAGUUUUC --------------.((((((((((.....((((((--((((.........)))))..................((((....)))).))))).)))))).))))....... ( -23.20) >DroPse_CAF1 23213 108 + 1 GCGGAGACAAUACGCAAAGCCACUUAAUAAAUAGCU--GGCUCUAACUUUCGGCUUAAUUUUAUUUAAUUUGCAGCUGUCGUCAGCAGCCGUAAAAAAGGCUUUAGUUUU- (((.........)))((((((....((((((.((((--((.........))))))....))))))...(((((.(((((.....))))).)))))...))))))......- ( -28.00) >DroMoj_CAF1 28461 103 + 1 GCUGAGA------GCAAAGCCACUUAAUAAAUGGCG--GGUUCUAACUUUCGGCUUAAUUUCAUUCAAUUUGCAGCUGUCGUCAGCAGCCGUAAAAAGGACUUUAGUUUUU (((((((------(..((.((.((........)).)--).))....))))))))..............(((((.(((((.....))))).)))))((((((....)))))) ( -25.30) >DroAna_CAF1 21548 96 + 1 -------------GGAAAGCCACUUAAUAAAUAGCGCU-CCUCCAACUUGGGGCUUAAUUUUAUUUAAUUUGCAGCUGUCGUCAGCAGCCGUAAAAAAGGCUUUAGUUUU- -------------..((((((....((((((....(((-((........))))).....))))))...(((((.(((((.....))))).)))))...))))))......- ( -27.40) >DroPer_CAF1 23124 108 + 1 GCAGAGACAAUACGCAAAGCCACUUAAUAAAUAGCU--GGCUCUAACUUUCGGCUUAAUUUUAUUUAAUUUGCAGCUGUCGUCAGCAGCCGUAAAAAAGGCUUUAGUUUU- .............((((((((....((((((.((((--((.........))))))....))))))...(((((.(((((.....))))).)))))...)))))).))...- ( -24.70) >consensus _____________GCAAAGCCACUUAAUAAAUAGCG__GGCUCUAACUUUCGGCUUAAUUUUAUUUAAUUUGCAGCUGUCGUCAGCAGCCGUAAAAAAGGCUUUAGUUUU_ ...............((((((...........(((....)))..........................(((((.(((((.....))))).)))))...))))))....... (-15.58 = -15.88 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:29 2006