Locus 3419

Sequence ID 2L_DroMel_CAF1
Location 9,903,126 – 9,903,246
Length 120
Max. P 0.680999
window5415

overview

Window 5

Location 9,903,126 – 9,903,246
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -34.10
Consensus MFE -28.41
Energy contribution -29.35
Covariance contribution 0.94
Combinations/Pair 1.07
Mean z-score -1.56
Structure conservation index 0.83
SVM decision value 0.31
SVM RNA-class probability 0.680999
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9903126 120 + 22407834
UCGAGCAAGACUCUGGAUUUUUGAGCCUUAGUUGGUGCUUAAAUAGGGAGCAGAAUAAAUGGCAUAGCAGGCCGCUGAUAAGGUCGUCCAGGGUCGUAGUUCAACAAAGUUCAACAGGUA
..((((..((((((((((....((.(((((.(..((((((.......)))).........(((.......)))))..))))))))))))))))))...)))).................. ( -36.40)
>DroSec_CAF1 16582 120 + 1
UCGAGCAAGACUCUGGAUUUUUGAGCCUUAGUUGGUGCUUAAAUAGGGAGCAGAACAAAUGACAUAGCAGGUCGCUGAUAAGGUCAGCCAGGGUCGUAGUUCAUCAAAGUUCAACAGGUA
..((((..((((((((..(((((..(((((.(((.....))).)))))..)))))....((((....(((....))).....)))).))))))))...)))).................. ( -33.60)
>DroEre_CAF1 17337 120 + 1
UCGAGCAAGACUCUGGAUUUUUGAGCCUCAGAUUGUGCUUAAAUAGGAAGCAAAGAAAAUGACAUAGCAGGGAACUGAUAAGGUACUCCAGGGUCGUAGUUCAACACAGUUCAACAGGUA
..((((..(((((((((.....(.((((((.....(((((.......))))).......))).....(((....)))....))).))))))))))...)))).................. ( -30.10)
>DroYak_CAF1 14730 120 + 1
UCGAGCAAGACUCUGGAUUUUUGAGCCUUAGUUGGUGCUUAAAUAGGAAGCAAAGAAAGUGGCAUAGCACUGAGCUGAUAAGGUUUUCCAGGGUCGUAGUUCAACACAGUUCAACAGGUA
..((((..(((((((((.....((((((((.(..((((((.......))))......((((......))))..))..))))))))))))))))))...)))).................. ( -36.30)
>consensus
UCGAGCAAGACUCUGGAUUUUUGAGCCUUAGUUGGUGCUUAAAUAGGAAGCAAAAAAAAUGACAUAGCAGGGAGCUGAUAAGGUCAUCCAGGGUCGUAGUUCAACAAAGUUCAACAGGUA
..((((..((((((((((......((((((.....(((((.......)))))............((((.....)))).)))))).))))))))))...)))).................. (-28.41 = -29.35 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:05 2006