Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,883,775 – 9,883,895 |
Length | 120 |
Max. P | 0.544948 |
Location | 9,883,775 – 9,883,895 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.00 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -24.04 |
Energy contribution | -23.84 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.08 |
Structure conservation index | 0.92 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9883775 120 + 22407834 AAGGCGAUUACGUUAAUAUGCCAUGGGCGUCUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUUGAGUUAUUAGCUCAUCACUUGGGCGAAUAAACAUUGACUGC ..((((((((...)))).))))....(((((.....................((((((((((((........))))).)))))))...(((((.....)))))...........))).)) ( -21.40) >DroSec_CAF1 91678 120 + 1 AAGGCGAUUACGUUAAUAUGCCAUGGGCGUAUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUAAACAGUGACUGU ......(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))((((...)))) ( -26.70) >DroSim_CAF1 98534 120 + 1 AAGGCGAUUACGUUAAUAUGCCAUGGGCGUAUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUAAACAGUGACUGU ......(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))((((...)))) ( -26.70) >DroEre_CAF1 96603 120 + 1 AAGGCGAUUACGUUAAUAUGCCACGGGCGUAUAAUAAAAAAGGUUAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUGGACAGUGACUAU ..((((....)))).(((((((...))))))).........((((((........(((((((((........)))))))))(((....(((((.....))))).....))).)))))).. ( -29.00) >DroYak_CAF1 96099 120 + 1 AAGGCGAUUACGUUAAUAUGCCAUGGGCGUGUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGGAGUUAUUAGCUCAACACUUGGGCAAAUAGGCAGUGACUUU ...((.(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))))......... ( -26.30) >consensus AAGGCGAUUACGUUAAUAUGCCAUGGGCGUAUAAUAAAUAAGGUAAUAAAUUUGAUUCGUUAACUGACUUACGUUAAUGAAGUUAUUAGCUCAACACUUGAGCGAAUAAACAGUGACUGU ......(((((.((((((((((...)))))))......))).)))))........(((((((((........))))))))).(((((.(((((.....))))).)))))........... (-24.04 = -23.84 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:56 2006