| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,882,049 – 9,882,139 |
| Length | 90 |
| Max. P | 0.859085 |
| Location | 9,882,049 – 9,882,139 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 80.37 |
| Mean single sequence MFE | -13.39 |
| Consensus MFE | -11.90 |
| Energy contribution | -11.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9882049 90 - 22407834 CUC------CCAUUUCUCCGGCCCUUGUGCAUGUGUGAGUAAAGUUUAUAUACAUAUAUAUAUAUUCUUUUUGCGUUGCUCACUCUUUUAUGUUCA ...------................((.(((((.((((((((((..((((((......))))))..)).......)))))))).....))))).)) ( -14.61) >DroSim_CAF1 96847 78 - 1 CUC------CCAUUUCUCCGGCCCUUGUGCAUGUGUGAGUAAAGUUUAU------------AUAUUUUUUUUGCGUUGCUCACUCUUUUAUGUUCA ...------................((.(((((.((((((((.((....------------...........)).)))))))).....))))).)) ( -12.56) >DroYak_CAF1 94424 79 - 1 CUCUCUCUGCCAUUUCCCA-GCCCCUGUGCAUGUGUGAGUAAAGUUUAU--------------AU--UUUUUGCGUUGCUCACUCUUUUAUGUUCA ...................-......(.(((((.((((((((.((..(.--------------..--..)..)).)))))))).....))))).). ( -13.00) >consensus CUC______CCAUUUCUCCGGCCCUUGUGCAUGUGUGAGUAAAGUUUAU____________AUAUU_UUUUUGCGUUGCUCACUCUUUUAUGUUCA .........................((.(((((.((((((((.((...........................)).)))))))).....))))).)) (-11.90 = -11.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:52 2006