Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,881,427 – 9,881,547 |
Length | 120 |
Max. P | 0.929391 |
Location | 9,881,427 – 9,881,547 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.75 |
Mean single sequence MFE | -26.84 |
Consensus MFE | -23.84 |
Energy contribution | -24.00 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.52 |
Structure conservation index | 0.89 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9881427 120 - 22407834 UAAUUACAUUUUUACGAAUGCAGCUGCUGAAAAGUAUCAAGUUACUUAUUAAAUUUCAUUGAGCUUGCAGUUGUAUUGUAGUUAAACUUCUCUGACGUGAGUGUAAGAAAAGUUAAUAAA ((((((((....(((((.(((((((..(((((((((......)))).......)))))...))).)))).))))).))))))))(((((.(((.((....))...))).)))))...... ( -29.21) >DroSec_CAF1 89358 120 - 1 UAAUUACAUUUUUACGAAUCCAGCUGCUGAAAAGUCUCAAGUUACUUAUUAAAUUUCAUGGAGCUUGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUAGAGUGCAAGUAAAGUUAAUAAA ((((((((....(((((.(((((((.((((((......(((...)))......))))).).))).)))).))))).))))))))(((((..((.((......)).))..)))))...... ( -28.60) >DroSim_CAF1 96222 120 - 1 UAAUUACAUUUUUACGAAUCCAGCUGCUGAAAAGUCUCAAGUUACUUAUUAAAUUUCAUGGAGCUUGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUAGAGUGCAAGUAAAGUUAAUAAA ((((((((....(((((.(((((((.((((((......(((...)))......))))).).))).)))).))))).))))))))(((((..((.((......)).))..)))))...... ( -28.60) >DroEre_CAF1 94301 120 - 1 UAAUUACAUUUUUACGAAUGCAGCUGCUGAAAAGUCUCAAGUUACUUAUUUAAUUUCAUGGAGCUCGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUUGAGUGCAAGAAAAGUUAAUAAA ((((((((....(((((.((.((((.((((((......(((...)))......))))).).))))))...))))).))))))))(((((.(((.((......)).))).)))))...... ( -25.80) >DroYak_CAF1 93802 120 - 1 UAAUUACAUUUUUACGAAUGCAGCUGCUGGAAAAUCUCAAGUUACUUAUUAUAUUUCAUGGAGCUCGGAGUUGUAUUGUAGUUGAGCUUCUCUGGUUUGAGGGAGAGAAAAGUUAAUAAA ((((((((....(((((.((.((((.((((((.((...(((...)))...)).))))).).))))))...))))).))))))))(((((((((..........)))))..))))...... ( -22.00) >consensus UAAUUACAUUUUUACGAAUGCAGCUGCUGAAAAGUCUCAAGUUACUUAUUAAAUUUCAUGGAGCUUGGAGUUGUAUUGUAGUUAAACUUCUCUGGCUUGAGUGCAAGAAAAGUUAAUAAA ((((((((....(((((.(((((((.((((((......(((...)))......))))).).)))).))).))))).))))))))(((((.(((.((......)).))).)))))...... (-23.84 = -24.00 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:51 2006