Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,035,412 – 1,035,523 |
Length | 111 |
Max. P | 0.512522 |
Location | 1,035,412 – 1,035,523 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 87.48 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -18.31 |
Energy contribution | -17.43 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.20 |
Mean z-score | -1.58 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1035412 111 + 22407834 AUAGAAUUAAGCCAAAUAAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAGAGGAGACUCUCGAGCAGGCACAAUA--------UGAAUGCCUUGGCCAAGAUCUCAAUUACGGAAA ..(((.((..(((((....((.((..((.((((((.....)))).))..))((((....)))).)))).((((.....--------....)))))))))..)).)))............ ( -25.30) >DroSec_CAF1 17591 111 + 1 AGAGAAUUAAGCCAAGCCAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAAAGGAGACUCUCGAGCAGGCACAAUA--------UAAAUGCCUUGGCCAACAUCUCAAUUACGGAAA .((((.....(((((....((.((.....((((((.....)))).))((((...(....))))))))).((((.....--------....))))))))).....))))........... ( -26.70) >DroSim_CAF1 9310 111 + 1 AGAGAAUUAAGCCAAGCCAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAAAGGAGACUCUCGAGCAGGCACAAUA--------UAAAUGCCUUGGCCAAGAUCUCAAUUACGGAAA .((((.((..(((((....((.((.....((((((.....)))).))((((...(....))))))))).((((.....--------....)))))))))..)).))))........... ( -26.90) >DroEre_CAF1 15158 110 + 1 AUAGAAUUAAGCCAAAGAGGCAUCAAUCAGCGAUGAAAUUCAUUAGCAGG-AAAGGGGACCCUUCAGCAGACACAAUA--------UAAAUGUCUUGGCCAAGAUCUCAAUUACGGAAA ..(((.((..(((((.(((.((((.......))))...)))....((..(-((.((....))))).)).((((.....--------....)))))))))..)).)))............ ( -19.00) >DroYak_CAF1 16981 119 + 1 AUGGAAUUAGGCCAAAGAAGCAUCAAUCAGCGAUGAAAUUCAUUAGCGGCUAAAGGGGACUCUUGUGCAGACACAAUAUGCAUACAUAAAUGUCUUGGCCAAGAUCUCAAUUACGGCAA .(((.......)))..(((.((((.......))))...)))....((.(.(((..((((.(((((.(((((((...((((....))))..)))))..)))))))))))..)))).)).. ( -28.40) >consensus AUAGAAUUAAGCCAAACAAGCAUCAAUCAGCAAUGAAAUUCAUUAGCGGGAAAAGGAGACUCUCGAGCAGGCACAAUA________UAAAUGCCUUGGCCAAGAUCUCAAUUACGGAAA ..(((.....(((((....((........((((((.....)))).))(((...((....)))))..)).((((.................))))))))).....)))............ (-18.31 = -17.43 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:28 2006