Locus 3408

Sequence ID 2L_DroMel_CAF1
Location 9,867,153 – 9,867,252
Length 99
Max. P 0.831557
window5394

overview

Window 4

Location 9,867,153 – 9,867,252
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 91.12
Mean single sequence MFE -28.53
Consensus MFE -22.72
Energy contribution -23.50
Covariance contribution 0.78
Combinations/Pair 1.07
Mean z-score -2.86
Structure conservation index 0.80
SVM decision value 0.72
SVM RNA-class probability 0.831557
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9867153 99 - 22407834
---AGACGAGAUUGUUCGGCCAAAGACAAAUAUUUUCAAUAAGCUGAUAUCCAGAGUGUGCACUGAUUGGAAAAUCAGCAGUUGAAAAUUGCCGAGCGACGA
---........(((((((((...........(((((((((..((((((.((((((((....)))..)))))..)))))).))))))))).)))))))))... ( -31.00)
>DroSec_CAF1 75264 99 - 1
---AGUCAAGAUUGUUCGGCCAAAGACAAAUAUUUUCAAUAAGCUGAUAUCCAGAGUGUGCACUGAUUGGAAAAUCAGCAGUUGAAAAUUGCCGAGCGACGA
---........(((((((((...........(((((((((..((((((.((((((((....)))..)))))..)))))).))))))))).)))))))))... ( -31.00)
>DroSim_CAF1 82044 99 - 1
---UGGGGAGAUUGUUCGGCCAAAGACAAAUAUUUUCAAUAAGCUGAUAUCCAGAGUGUGCACUGAUUGGAAAAUCAGCAGUUGAAAAUUGCCGAGCGACGA
---........(((((((((...........(((((((((..((((((.((((((((....)))..)))))..)))))).))))))))).)))))))))... ( -31.00)
>DroEre_CAF1 79996 98 - 1
---AGUCGAGAUUGUUCGGCCAAAGACAAAUAUUUUCAAUAAGCUGAUAU-CAGAGUGUGCACUGAUUGGAAAAUCAGCAGUUGGAAAUUGCCGAGCGACGA
---..(((...(((((((((...........(((((((((..((((((((-(((.(....).)))))......)))))).))))))))).)))))))))))) ( -28.90)
>DroYak_CAF1 79166 98 - 1
---AGUCAAGAUUGUUCGGCCAAAGACAAAUAUUUUCAAUAAGCUGAUAU-CAGAGUGUGCAAUGAUUGGAAAAUCAGCAGUUGGAAAUUGCCGAGCGACGA
---........(((((((((...........(((((((((...(((....-)))....(((..(((((....))))))))))))))))).)))))))))... ( -26.40)
>DroAna_CAF1 83059 93 - 1
GCGUCUCGAGAUUGCUCGGCCAAAGACAAAUAUUUUCAAUAAGCUGAUAU-CGGAGUGUGCACUGAUUGGAAAAUCAGGAGUUGGAAAUUGCCA--------
((((((((((....)))).....))))....(((((((((...(((....-)))........((((((....))))))..))))))))).))..-------- ( -22.90)
>consensus
___AGUCGAGAUUGUUCGGCCAAAGACAAAUAUUUUCAAUAAGCUGAUAU_CAGAGUGUGCACUGAUUGGAAAAUCAGCAGUUGAAAAUUGCCGAGCGACGA
...........(((((((((...........(((((((((...(((.....)))........((((((....))))))..))))))))).)))))))))... (-22.72 = -23.50 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:45 2006