Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,862,701 – 9,862,793 |
Length | 92 |
Max. P | 0.994373 |
Location | 9,862,701 – 9,862,793 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -32.42 |
Consensus MFE | -23.92 |
Energy contribution | -25.16 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.63 |
Structure conservation index | 0.74 |
SVM decision value | 2.47 |
SVM RNA-class probability | 0.994373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9862701 92 + 22407834 CUCAUUGUUUGGCACUUAGUCAGGACGAUGUCGGCAGCAGAGGCUCCUGCUUCUGCUCCUGCU------CCUGCUCCUGCUCGUGCAUCUGCGCUGCC ..(((((((((((.....)))).)))))))..((((((((((((....))))))((...(((.------(..((....))..).)))...)))))))) ( -36.50) >DroSec_CAF1 70754 74 + 1 CUCAUUGUUCGGCACUUAGUCAGGACGAUGUCGGCAGCAGACGCUCCUGCUUCUGCUCCU------------------------GCAUCUGCGCUGCC ..(((((((((((.....))).)))))))).((((.(((((.((....((....))....------------------------)).))))))))).. ( -27.30) >DroSim_CAF1 77535 74 + 1 CUCAUUGUUCGGCACUUAGUCAGGACGAUGUCGGCAGCAGAGGCUCCUGCUUCUGCUCCU------------------------GCAUCUGCGCUGCC ..(((((((((((.....))).))))))))..((((((((((((....))))))((....------------------------))......)))))) ( -31.10) >DroEre_CAF1 75469 92 + 1 CUCAUUGUUCGGCACUUAGUCAGGAGGAUGUCGGCAGCAGAGACUCCUGCUCCAGCUCCAGCU------CCUGCUCCUGCUCUUGCAUCUGCGCUGCC .........((((....((.((((((((.((.((.(((((......))))))).))))).((.------...)))))))))...((....)))))).. ( -29.50) >DroYak_CAF1 74336 98 + 1 CUCAUUGUUCGGCACUUAGUCAGGACGAUGUCGGCAGCAGAGACUUUAGCUACUGCUCCUUCUCCUGAUCCUGCAACUGCAACUGCAGCUGCGCUGCC ..(((((((((((.....))).))))))))..((((((.((((....(((....)))...))))........(((.((((....)))).))))))))) ( -37.70) >consensus CUCAUUGUUCGGCACUUAGUCAGGACGAUGUCGGCAGCAGAGGCUCCUGCUUCUGCUCCU_CU______CCUGC__CUGC___UGCAUCUGCGCUGCC ..(((((((((((.....))).))))))))..((((((((((((....))))))..............................((....)))))))) (-23.92 = -25.16 + 1.24)
Location | 9,862,701 – 9,862,793 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -19.28 |
Energy contribution | -19.32 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.65 |
Structure conservation index | 0.62 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555189 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9862701 92 - 22407834 GGCAGCGCAGAUGCACGAGCAGGAGCAGG------AGCAGGAGCAGAAGCAGGAGCCUCUGCUGCCGACAUCGUCCUGACUAAGUGCCAAACAAUGAG (((((.((....)).).(((((((((...------.)).((((((((.((....)).)))))).)).......))))).))...)))).......... ( -31.70) >DroSec_CAF1 70754 74 - 1 GGCAGCGCAGAUGC------------------------AGGAGCAGAAGCAGGAGCGUCUGCUGCCGACAUCGUCCUGACUAAGUGCCGAACAAUGAG ((((.....((((.------------------------.((((((((.((....)).)))))).))..))))((....))....)))).......... ( -25.80) >DroSim_CAF1 77535 74 - 1 GGCAGCGCAGAUGC------------------------AGGAGCAGAAGCAGGAGCCUCUGCUGCCGACAUCGUCCUGACUAAGUGCCGAACAAUGAG ((((.....((((.------------------------.((((((((.((....)).)))))).))..))))((....))....)))).......... ( -25.80) >DroEre_CAF1 75469 92 - 1 GGCAGCGCAGAUGCAAGAGCAGGAGCAGG------AGCUGGAGCUGGAGCAGGAGUCUCUGCUGCCGACAUCCUCCUGACUAAGUGCCGAACAAUGAG ((((..((....))...(((((((((...------.)).(((..(((((((((....)))))).)))...)))))))).))...)))).......... ( -30.40) >DroYak_CAF1 74336 98 - 1 GGCAGCGCAGCUGCAGUUGCAGUUGCAGGAUCAGGAGAAGGAGCAGUAGCUAAAGUCUCUGCUGCCGACAUCGUCCUGACUAAGUGCCGAACAAUGAG ((((..((((((((....)))))))).((.((((((((.(((((((..((....))..))))).))....)).))))))))...)))).......... ( -41.40) >consensus GGCAGCGCAGAUGCA___GCAG__GCAGG______AG_AGGAGCAGAAGCAGGAGCCUCUGCUGCCGACAUCGUCCUGACUAAGUGCCGAACAAUGAG ((((..((....)).........................((((((((.((....)).)))))).))..................)))).......... (-19.28 = -19.32 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:44 2006