Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,849,633 – 9,849,723 |
Length | 90 |
Max. P | 0.619927 |
Location | 9,849,633 – 9,849,723 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -24.78 |
Energy contribution | -26.03 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.07 |
Mean z-score | -2.20 |
Structure conservation index | 0.81 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9849633 90 - 22407834 AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAUCUAAACA--UGCACAUCCUCGCA--CCGC ..((.((((((((((((((.(((.......)))..)))))))...................((((......)--)))))))))).)).--.... ( -30.30) >DroSec_CAF1 58329 90 - 1 AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAGCUAAACA--UGUACAUCCUCGCA--CCGC ..((.(((((((((..((((((((.......(((....))).(((..(.....)..)))))))))))...))--...))))))).)).--.... ( -31.10) >DroSim_CAF1 64435 90 - 1 AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAGCUAAACA--UGCACAUCCUCGCA--CCGC ..((.(((((((.((.((((((((.......(((....))).(((..(.....)..))))))))))).....--.))))))))).)).--.... ( -32.50) >DroEre_CAF1 60860 90 - 1 GGGCUACGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGCUUGUAUUUAAUGAAUGAGCAGCUAAACA--UGCACAUCCUCGCA--CCGC (((((((((.(((((((((.(((.......)))..))))))))))))))......(((((.(((........--))).)))..)))).--)).. ( -30.80) >DroYak_CAF1 61252 90 - 1 GGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUGGUAUUUAAUGAAUGAGCAGCUAAACA--UGCACAUCUUCGCA--CCGC ((((.(((((((.((.((((((((.((((((((.((....)))))))........))).)))))))).....--.))))))))).)).--)).. ( -32.80) >DroAna_CAF1 64776 94 - 1 CGGCAAGGAUGUUGCCGGCUGCUCCUUCCCAGCCUCCUGGCAGUUUGCAUUUAAUGAAUGAGCAGCUAAACACAUACACAGACACGCAAACAGC ((((((.....))))))(((((((.(((...(((....))).(....).......))).)))))))............................ ( -26.60) >consensus AGGCCAGGAUGUUGCCGGCUGCUCCUUUCCAGCCUGCUGGCAGUUUGUAUUUAAUGAAUGAGCAGCUAAACA__UGCACAUCCUCGCA__CCGC ..((.(((((((.((.((((((((.......(((....))).((((((.....))))))))))))))........))))))))).))....... (-24.78 = -26.03 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006