Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,846,404 – 9,846,499 |
Length | 95 |
Max. P | 0.667236 |
Location | 9,846,404 – 9,846,499 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 84.39 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -20.03 |
Energy contribution | -21.20 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.14 |
Mean z-score | -2.33 |
Structure conservation index | 0.73 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9846404 95 - 22407834 -GCAGGAGUU---GGUGGUGGGAUGUCCUGCGAGAAGCGGAGGCAUACAAAGUGAGUUAUGAAACGUUGACAAGACAUUUUAUUGCACACAGAGAUACG -.........---.(((.((..(((((((((.....)))).))))).))..(((.((.((((((.(((.....))).)))))).)).))).....))). ( -21.90) >DroPse_CAF1 58253 81 - 1 -GCAGGAG--------GGUUGGAGGCC-------ACACAGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGUACUCUCC--CUCG -....(((--------(((((...(((-------.......)))...)))...((((.((((((((((.....))))))))))...)))).))--))). ( -27.20) >DroSec_CAF1 55082 98 - 1 -GCAGGAGGCGGAGGUGGUGGGAUGUCCUGCGAGAAGCGGACGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGAGACACG -((.....))....((((((.(.(((((.((.....)))))))).)))...(((.((.((((((((((.....)))))))))).)).))).....))). ( -28.20) >DroSim_CAF1 58172 98 - 1 -GCAGGAGGCGGAGGUGGUGGCAUGUCCUGCGAGAAGCGGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGCGACACG -((.....))....(((.(.(((((((((((.....)))).))))).....(((.((.((((((((((.....)))))))))).)).))).)).)))). ( -31.40) >DroEre_CAF1 57708 89 - 1 -GCAGGA---------GGUGGGAUGUCCUGCGAGAAGCAGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACGGAGACACG -......---------.(((..(((((((((.....)))).))))).....(((.((.((((((((((.....)))))))))).)).))).....))). ( -28.40) >DroYak_CAF1 57984 90 - 1 UGCAGGA---------GGUGGGAUGUCCUGCGAGAGGCGGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGAGACACG .......---------.(((..(((((((((.....)))).))))).....(((.((.((((((((((.....)))))))))).)).))).....))). ( -27.10) >consensus _GCAGGAG________GGUGGGAUGUCCUGCGAGAAGCGGAGGCAUACAAAGUGAGUUAUGAAAUGUUGACAAGACAUUUUAUUGCACACAGAGACACG .................((((.(((((((((.....)))).))))).)...(((.((.((((((((((.....)))))))))).)).))).....))). (-20.03 = -21.20 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:38 2006