Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,026,353 – 1,026,461 |
Length | 108 |
Max. P | 0.938438 |
Location | 1,026,353 – 1,026,461 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.16 |
Mean single sequence MFE | -43.80 |
Consensus MFE | -21.54 |
Energy contribution | -22.74 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.22 |
Mean z-score | -2.00 |
Structure conservation index | 0.49 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1026353 108 + 22407834 ------------GGACUUGAGAGGAGCCACAAAGGCCACGAGCCGAGAUUGUUCAGGCUCGACCUUGGAGAUUGGUUUUUCGCAGAGACCUCCGUUGGUAGUCUUGUGAGUAUCUGAUGG ------------((.(((..(((((((((..((((...((((((..((....)).)))))).))))......)))))))))...))).)).((((..(((.((....)).)).)..)))) ( -37.70) >DroSec_CAF1 8010 120 + 1 CGGGGAGGCAGAUGAUAUGGGAGGAGCCACAAAGGCCACGAGCCGAGAUUGUUCAGGCUCGUCUUUGGAGAUUUCUUUUUCCCAGGAAAGCCCAGUGGCACUCUUGUGAGUAUCUGAUGG ........((((((.((..((((..(((((...(((..((((((..((....)).))))))((((.(((((......))))).))))..)))..))))).))))..))..)))))).... ( -47.40) >DroSim_CAF1 109 120 + 1 CGGGAGAGCAGAGGAUUUGGGAGGCACCACAAAGGCCACGAGCCGAGAUUGUUCAGGCUCGUCUUUGGAGAUUUGUUUUUCCAAGGGAAGCCCAGUGGCACUCUUGUGAGUAUCUGAUGG ........((((..(((((((((...((((...(((.(((((((..((....)).)))))))(((((((((......)))))))))...)))..))))..)))))..)))).)))).... ( -42.80) >DroEre_CAF1 6528 102 + 1 G------GCAGGGGAUUUGGGUGGAGGCACAAAGGCCACGAGCCGCGAUAGUUCAGGCUCGUCUCUGGAGAUUUGCGUUUUCC---GAUUCUUAGG---A--CCCU----CAUCUCCUGG .------.((((((((..((((((((((......)))(((((((..((....)).))))))).)))(((((.......)))))---..........---)--))).----.)))))))). ( -42.50) >DroYak_CAF1 7883 111 + 1 C------CCAGGGGAUUGGGGAGGAGGCACAAAAGCCACGAGCCGCGAUGGUUCUGGCUCGUCUUUGGAGAUGGGUUCUUUCG---AAUUCUUGGUGGCACUCCCUUGGGCAUCUCCUGG .------(((((((((.((((((..(((......)))....(((((.(.(((((.(((((((((....))))))))).....)---))))..).))))).)))))).....))))))))) ( -48.60) >consensus C______GCAGAGGAUUUGGGAGGAGCCACAAAGGCCACGAGCCGAGAUUGUUCAGGCUCGUCUUUGGAGAUUUGUUUUUCCCAG_GAAGCCCAGUGGCACUCUUGUGAGUAUCUGAUGG ..................(((((...((((.((((..(((((((..((....)).)))))))))))(((((......)))))............))))..)))))............... (-21.54 = -22.74 + 1.20)
Location | 1,026,353 – 1,026,461 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.16 |
Mean single sequence MFE | -34.54 |
Consensus MFE | -13.56 |
Energy contribution | -13.28 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.21 |
Mean z-score | -2.00 |
Structure conservation index | 0.39 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1026353 108 - 22407834 CCAUCAGAUACUCACAAGACUACCAACGGAGGUCUCUGCGAAAAACCAAUCUCCAAGGUCGAGCCUGAACAAUCUCGGCUCGUGGCCUUUGUGGCUCCUCUCAAGUCC------------ .................((((......((((((...............)))))).(((.((((((.((......)))))))).((((.....)))))))....)))).------------ ( -26.36) >DroSec_CAF1 8010 120 - 1 CCAUCAGAUACUCACAAGAGUGCCACUGGGCUUUCCUGGGAAAAAGAAAUCUCCAAAGACGAGCCUGAACAAUCUCGGCUCGUGGCCUUUGUGGCUCCUCCCAUAUCAUCUGCCUCCCCG ....(((((((((....))))(((((.(((((....(((((........)).)))...(((((((.((......))))))))))))))..)))))............)))))........ ( -38.30) >DroSim_CAF1 109 120 - 1 CCAUCAGAUACUCACAAGAGUGCCACUGGGCUUCCCUUGGAAAAACAAAUCUCCAAAGACGAGCCUGAACAAUCUCGGCUCGUGGCCUUUGUGGUGCCUCCCAAAUCCUCUGCUCUCCCG ....((((........((.(..((((.(((((....(((((..........)))))..(((((((.((......))))))))))))))..))))..))).........))))........ ( -35.93) >DroEre_CAF1 6528 102 - 1 CCAGGAGAUG----AGGG--U---CCUAAGAAUC---GGAAAACGCAAAUCUCCAGAGACGAGCCUGAACUAUCGCGGCUCGUGGCCUUUGUGCCUCCACCCAAAUCCCCUGC------C .((((.(((.----.(((--(---..........---(((...((((((...((....((((((((((....))).)))))))))..))))))..)))))))..))).)))).------. ( -33.10) >DroYak_CAF1 7883 111 - 1 CCAGGAGAUGCCCAAGGGAGUGCCACCAAGAAUU---CGAAAGAACCCAUCUCCAAAGACGAGCCAGAACCAUCGCGGCUCGUGGCUUUUGUGCCUCCUCCCCAAUCCCCUGG------G (((((.(((......(((((............((---(....))).............(((((((.((....))..)))))))(((......)))..)))))..))).)))))------. ( -39.00) >consensus CCAUCAGAUACUCACAAGAGUGCCACUGGGAAUC_CUGGGAAAAACAAAUCUCCAAAGACGAGCCUGAACAAUCUCGGCUCGUGGCCUUUGUGGCUCCUCCCAAAUCCCCUGC______G .....................................................((((((((((((.((....))..)))))))...)))))............................. (-13.56 = -13.28 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:27 2006