Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,837,339 – 9,837,430 |
Length | 91 |
Max. P | 0.568014 |
Location | 9,837,339 – 9,837,430 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 86.82 |
Mean single sequence MFE | -15.40 |
Consensus MFE | -12.21 |
Energy contribution | -12.17 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.17 |
Mean z-score | -1.50 |
Structure conservation index | 0.79 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9837339 91 + 22407834 UUGCUGACAGCUCGAAAUUCCUAGAAAAUUCGCAAACUAAUAUUCUGGAAUUUAUGACCUGUCCUCGAUAUUCUAGUUUAUUAUUGCCCAU (((..(((((.((((((((((.((((.(((........))).))))))))))).))).)))))..)))....................... ( -18.50) >DroSec_CAF1 45891 90 + 1 UUGCUGACAGCUCGAAAUUCCUACA-AAUUCCCAAACUAAUAUCCUGGAAUUUAUGACCUGUCUUCGAUAUUCUAGUUUAUUAAUGCCCGU (((..(((((.((((((((((....-....................))))))).))).)))))..)))....................... ( -15.56) >DroSim_CAF1 48992 90 + 1 UUGCUGACAGCUCGAAAUUCCUACA-AAUUCCCAAACUAAUAUCCUGGAAUUUAUGACCUGUCUUCGAUAUUCUAGUUUAUUAAUGCCCGU (((..(((((.((((((((((....-....................))))))).))).)))))..)))....................... ( -15.56) >DroEre_CAF1 48628 88 + 1 UUGCUGACAGCUCCAAAUUCCUGCA-AAUUCCC-AGAUAAUAUUCUGCAAUUUAUGGCCUGUCCUUAAUAUUUAAGUUUAUGAUUGC-CUU ..((.(((((..(((((((......-))))..(-(((......)))).......))).)))))((((.....)))).........))-... ( -10.10) >DroYak_CAF1 48008 89 + 1 UUGCUGACAGCUCUAAAUUCCUAUA-AAUUCCA-AGCUAAUAUUCUGGAAUUUAUGGCCUGUCCUCAAUACUUUAGUUUAUGAUUGCACUU .(((.(((((((.((((((((....-.......-............)))))))).)).))))).(((..((....))...)))..)))... ( -17.30) >consensus UUGCUGACAGCUCGAAAUUCCUACA_AAUUCCCAAACUAAUAUUCUGGAAUUUAUGACCUGUCCUCGAUAUUCUAGUUUAUUAUUGCCCGU (((..(((((.((((((((((.........................))))))).))).)))))..)))....................... (-12.21 = -12.17 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:31 2006